RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CISD3P0C7P0 127 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 GOT1P17174 413 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 CD72P21854 359 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 CTHP32929 405 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 ZXDAP98168 799 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 PFKPQ01813 784 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 MMRN1Q13201 1228 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 PPP6R3Q5H9R7 873 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-227ENST00000557269 FSCBQ5H9T9 825 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 LRRC38Q5VT99 294 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 RWDD4Q6NW29 188 aaKnown RBP13.22□□□□□ -0.29
SHMT2-227ENST00000557269 SFTPA1Q8IWL2 248 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 RHOT1Q8IXI2 618 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 PHTF2Q8N3S3 785 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 HJURPQ8NCD3 748 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-227ENST00000557269 OR52K2Q8NGK3 314 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 FAM71BQ8TC56 605 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 TSC1Q92574 1164 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 ANTXRLA6NF34 631 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 DDX3YO15523 660 aaKnown RBP13.21□□□□□ -0.29
SHMT2-227ENST00000557269 TULP3O75386 442 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 CYBBP04839 570 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 KRT7P08729 469 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 CTNNA2P26232 953 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 HOXC13P31276 330 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 CTNNA1P35221 906 aaKnown RBP13.21□□□□□ -0.29
SHMT2-227ENST00000557269 NUMBP49757 651 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 PEX5P50542 639 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 GALK1P51570 392 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 CDH6P55285 790 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 NR1H3Q13133 447 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 DPYSL3Q14195 570 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 MLF2Q15773 248 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-227ENST00000557269 RABGAP1LQ5R372 815 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 MPP7Q5T2T1 576 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 LRRC31Q6UY01 552 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 TPRG1Q6ZUI0 275 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 RFX8Q6ZV50 586 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 PEX26Q7Z412 305 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 POLNQ7Z5Q5 900 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 TFAP2DQ7Z6R9 452 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 NLRP14Q86W24 1093 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 UBALD2Q8IYN6 164 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 CARNMT1Q8N4J0 409 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 KCTD6Q8NC69 237 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 ALG3Q92685 438 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 RNF25Q96BH1 459 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-227ENST00000557269 TBC1D31Q96DN5 1066 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 LMLNQ96KR4 655 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 ZYG11BQ9C0D3 744 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 KCND1Q9NSA2 647 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 NDFIP2Q9NV92 336 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 PPARGC1AQ9UBK2 798 aaKnown RBP13.21□□□□□ -0.29
SHMT2-227ENST00000557269 WNT16Q9UBV4 365 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 FBXO10Q9UK96 956 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 MFHAS1Q9Y4C4 1052 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 PCDHA3Q9Y5H8 950 aa13.21□□□□□ -0.29
SHMT2-227ENST00000557269 LRRD1A4D1F6 860 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 EEF2KO00418 725 aaKnown RBP13.2□□□□□ -0.3
SHMT2-227ENST00000557269 PSTPIP1O43586 416 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 LUC7L3O95232 432 aaKnown RBP13.2□□□□□ -0.3
SHMT2-227ENST00000557269 KRT1P04264 644 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 AMPD1P23109 780 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 KDELR1P24390 212 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 EPHB2P29323 1055 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 HLA-FP30511 346 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 CD70P32970 193 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 TPI1P60174 286 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 KDSRQ06136 332 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 DPYSQ14117 519 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 KRT81Q14533 505 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 PON2Q15165 354 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 ACBD5Q5T8D3 534 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-227ENST00000557269 CXorf57Q6NSI4 855 aaKnown RBP13.2□□□□□ -0.3
SHMT2-227ENST00000557269 RALGPS2Q86X27 583 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-227ENST00000557269 KATNAL2Q8IYT4 538 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 SYCE1Q8N0S2 351 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 SIX5Q8N196 739 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 NETO2Q8NC67 525 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 EZH1Q92800 747 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-227ENST00000557269 CSPG4P5Q96PW8 444 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 EPAS1Q99814 870 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 C8orf33Q9H7E9 229 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-227ENST00000557269 ARHGEF3Q9NR81 526 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 ETNK2Q9NVF9 386 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 DNAJC17Q9NVM6 304 aaKnown RBP13.2□□□□□ -0.3
SHMT2-227ENST00000557269 FBXL21Q9UKT6 434 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 AMFRQ9UKV5 643 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 MTF2Q9Y483 593 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-227ENST00000557269 VCANP13611 3396 aa13.2□□□□□ -0.3
SHMT2-227ENST00000557269 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-227ENST00000557269 A0A1B0GVM2 712 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 TCAF2A6NFQ2 919 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 H0Y626 953 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 H3BRJ5 948 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 DCXO43602 365 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 GLULP15104 373 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 RHOQP17081 205 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 ERCC2P18074 760 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 HCAR3P49019 387 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms