RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 PARS2Q7L3T8 475 aaKnown RBP1.75□□□□□ -2.13
PRPF39-208ENST00000554785 WDR53Q7Z5U6 358 aaPredicted RBP1.75□□□□□ -2.13
PRPF39-208ENST00000554785 ZNF354CQ86Y25 554 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 CCDC117Q8IWD4 279 aaPredicted RBP1.75□□□□□ -2.13
PRPF39-208ENST00000554785 SMAP1Q8IYB5 467 aaPredicted RBP1.75□□□□□ -2.13
PRPF39-208ENST00000554785 NRSN1Q8IZ57 195 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 CPXCR1Q8N123 301 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 GALNT15Q8N3T1 639 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 SIRT6Q8N6T7 355 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 C9orf106Q8NAJ2 232 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 PPM1EQ8WY54 764 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 RSC1A1Q92681 617 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 VPS50Q96JG6 964 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 PRR25Q96S07 402 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 WDR24Q96S15 920 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 NUDT22Q9BRQ3 303 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 ISCA1Q9BUE6 129 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 C1QTNF7Q9BXJ2 289 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 QTRT1Q9BXR0 403 aaKnown RBP1.75□□□□□ -2.13
PRPF39-208ENST00000554785 TP63Q9H3D4 680 aaPredicted RBP1.75□□□□□ -2.13
PRPF39-208ENST00000554785 DLL3Q9NYJ7 618 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 LUZP4Q9P127 313 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 GABRQQ9UN88 632 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 PCDHGB3Q9Y5G1 929 aa1.75□□□□□ -2.13
PRPF39-208ENST00000554785 ARHGAP31Q2M1Z3 1444 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 CEP162Q5TB80 1403 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 TNS3Q68CZ2 1445 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 CLTCL1P53675 1640 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 IQGAP3Q86VI3 1631 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 PHRF1Q9P1Y6 1649 aaKnown RBP1.74□□□□□ -2.13
PRPF39-208ENST00000554785 COL14A1Q05707 1796 aaKnown RBP1.74□□□□□ -2.13
PRPF39-208ENST00000554785 RGPD5Q99666 1765 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 A8MVJ9 347 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 AP4M1O00189 453 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 CES2O00748 559 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 DHHO43323 396 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 SPRY2O43597 315 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 CBFA2T3O75081 653 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 TAF5LO75529 589 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 ACTL6BO94805 426 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 FAM163BP0C2L3 166 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 PRR35P0CG20 571 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 DHRS4L1P0CG22 281 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 TMEM225BP0DP42 221 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 GYS1P13807 737 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 VEGFAP15692 232 aaPredicted RBP1.74□□□□□ -2.13
PRPF39-208ENST00000554785 CREB1P16220 341 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 ENGP17813 658 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 SFPQP23246 707 aaKnown RBP eCLIP1.74□□□□□ -2.13
PRPF39-208ENST00000554785 KLRK1P26718 216 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 CYP2C18P33260 490 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 PBX1P40424 430 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 GSTM5P46439 218 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 CCT5P48643 541 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 RENBPP51606 427 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 ARL4CP56559 192 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 E2F1Q01094 437 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 MTAPQ13126 283 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 BIRC3Q13489 604 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 KLF9Q13886 244 aaPredicted RBP1.74□□□□□ -2.13
PRPF39-208ENST00000554785 CSHL1Q14406 222 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 GRM4Q14833 912 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 CYP1B1Q16678 543 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 ST3GAL2Q16842 350 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 TIGD6Q17RP2 521 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 P3H1Q32P28 736 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 TBC1D25Q3MII6 688 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 SUPT20HL1Q3ZLR7 823 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 C4orf46Q504U0 113 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 HSP90AB4PQ58FF6 505 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 TMEM196Q5HYL7 178 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 CEP78Q5JTW2 689 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 ATPAF1Q5TC12 328 aaPredicted RBP1.74□□□□□ -2.13
PRPF39-208ENST00000554785 ZNF626Q68DY1 528 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 TANGO2Q6ICL3 276 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 SULT6B1Q6IMI4 303 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 LIN54Q6MZP7 749 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 RINT1Q6NUQ1 792 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 JMJD6Q6NYC1 403 aaPredicted RBP1.74□□□□□ -2.13
PRPF39-208ENST00000554785 MTHFD1LQ6UB35 978 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 Q6ZWC4 215 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 NGDNQ8NEJ9 315 aaKnown RBP1.74□□□□□ -2.13
PRPF39-208ENST00000554785 OR1N1Q8NGS0 311 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 RP9Q8TA86 221 aaKnown RBP1.74□□□□□ -2.13
PRPF39-208ENST00000554785 STT3BQ8TCJ2 826 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 OTUD7AQ8TE49 926 aaPredicted RBP1.74□□□□□ -2.13
PRPF39-208ENST00000554785 WDR60Q8WVS4 1066 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 RUBCNQ92622 972 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 CTHRC1Q96CG8 243 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 WDYHV1Q96HA8 205 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 RTKNQ9BST9 563 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 FAM167BQ9BTA0 163 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 FSCN3Q9NQT6 498 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 FLRT1Q9NZU1 646 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 MGAT4CQ9UBM8 478 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 ZNF70Q9UC06 446 aaPredicted RBP1.74□□□□□ -2.13
PRPF39-208ENST00000554785 AMFRQ9UKV5 643 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 DGKBQ9Y6T7 804 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 DISP2A7MBM2 1401 aa1.74□□□□□ -2.13
PRPF39-208ENST00000554785 DAPK1P53355 1430 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms