RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 IFNKQ9P0W0 207 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 MBD1Q9UIS9 605 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 RAB23Q9ULC3 237 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 VANGL2Q9ULK5 521 aa11.98□□□□□ -0.49
CCDC88C-208ENST00000554165 F5H5T6 163 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 H0Y626 953 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 GOLGA6L19H0YKK7 550 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 CNTN5O94779 1100 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 SLC2A3P11169 496 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 MZF1P28698 734 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 RFC1P35251 1148 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 P2RY2P41231 377 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 CSKP41240 450 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 NSFP46459 744 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 ZNF445P59923 1031 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 ENPP2Q13822 863 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 ASIC2Q16515 512 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 PTPRNQ16849 979 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 CDO1Q16878 200 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 MAP7D1Q3KQU3 841 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 CCDC14Q49A88 953 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 LAIR1Q6GTX8 287 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 SDE2Q6IQ49 451 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 MON1BQ7L1V2 547 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 BNIPLQ7Z465 357 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 FAM131BQ86XD5 332 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 CACUL1Q86Y37 369 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 PHF13Q86YI8 300 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 RNF214Q8ND24 703 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 CPLX3Q8WVH0 158 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 MKRN2Q9H000 416 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 HAUS4Q9H6D7 363 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 WDCPQ9H6R7 721 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 ARHGEF38Q9NXL2 777 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 SLC12A6Q9UHW9 1150 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 DMXL1Q9Y485 3027 aa11.97□□□□□ -0.49
CCDC88C-208ENST00000554165 TCRBV5S1A1TA0A578 114 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 C2CD4BA6NLJ0 364 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 DDX3XO00571 662 aaKnown RBP eCLIP11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 ATMINO43313 823 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 ALDH1A2O94788 518 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 LUC7L3O95232 432 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 EPHX1P07099 455 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 PDGFRAP16234 1089 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 TNFAIP3P21580 790 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 RRM1P23921 792 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 TPM4P67936 248 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 CDH18Q13634 790 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 EIF4HQ15056 248 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 FNDC3BQ53EP0 1204 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 USP39Q53GS9 565 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 ALFQ53S48 1182 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 PITRM1Q5JRX3 1037 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 SFMBT2Q5VUG0 894 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 ACAD10Q6JQN1 1059 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 KIAA1324Q6UXG2 1013 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 SERPINA13PQ6UXR4 307 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 ZNF683Q8IZ20 524 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 CCAR2Q8N163 923 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 MSANTD4Q8NCY6 345 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 WFIKKN2Q8TEU8 576 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 UCMAQ8WVF2 138 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 PGAP3Q96FM1 320 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 MYO19Q96H55 970 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 MRGPRX1Q96LB2 322 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 RPRD1AQ96P16 312 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 ARRDC1-AS1Q9H2J1 176 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 TMEM245Q9H330 911 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 TSPY26PQ9H489 355 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 RRN3Q9NYV6 651 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 AIPL1Q9NZN9 384 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 GMEB2Q9UKD1 530 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 STAP1Q9ULZ2 295 aa11.96□□□□□ -0.49
CCDC88C-208ENST00000554165 THADAQ6YHU6 1953 aa11.96□□□□□ -0.5
CCDC88C-208ENST00000554165 SPTBN2O15020 2390 aa11.96□□□□□ -0.5
CCDC88C-208ENST00000554165 NUMA1Q14980 2115 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 RALGAPA1Q6GYQ0 2036 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 TIMM44O43615 452 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 RETP07949 1114 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 PLEKP08567 350 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 DLDP09622 509 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 KRT3P12035 628 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 POLR2EP19388 210 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 RDXP35241 583 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 STK19P49842 368 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 COPAP53621 1224 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 RPL7AP62424 266 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 OGDHQ02218 1023 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 SF3A2Q15428 464 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 BRMS1LQ5PSV4 323 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 CXorf57Q6NSI4 855 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 WDR59Q6PJI9 974 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 ARMCX6Q7L4S7 300 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 TMEFF1Q8IYR6 380 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 MCOLN2Q8IZK6 566 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 AHI1Q8N157 1196 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 TTC17Q96AE7 1141 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 ZC3H10Q96K80 434 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 RPL10LQ96L21 214 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms