RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 FOXO6A8MYZ6 492 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 FGF10O15520 208 aaPredicted RBP27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 KRT15P19012 456 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 PTPN3P26045 913 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 YWHAQP27348 245 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 GARSP41250 739 aaKnown RBP27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 SLC18A1P54219 525 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 EFTUD2Q15029 972 aaKnown RBP eCLIP27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 RTP2Q5QGT7 225 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 LRRC8BQ6P9F7 803 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 DCAKDQ8WVC6 231 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 CFAP36Q96G28 342 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 VAT1Q99536 393 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 EBNA1BP2Q99848 306 aaKnown RBP27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 TRABDQ9H4I3 376 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 GMIPQ9P107 970 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 TRHDEQ9UKU6 1024 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 TLR6Q9Y2C9 796 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 NT5C1B-RDH14C9J2C7 533 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 EBAG9O00559 213 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 MSI1O43347 362 aaKnown RBP27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 CPP00450 1065 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 HAPLN1P10915 354 aaPredicted RBP27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 SLC2A3P11169 496 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 PSEN1P49768 467 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 ARPP19P56211 112 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 USP46P62068 366 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 PID1Q7Z2X4 250 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 DEFB128Q7Z7B8 93 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 LZTR1Q8N653 840 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 TBC1D31Q96DN5 1066 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 ZNF317Q96PQ6 595 aaPredicted RBP27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 PRMT1Q99873 361 aaKnown RBP27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 CATSPERBQ9H7T0 1116 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 NKIRAS1Q9NYS0 192 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 CLIC5Q9NZA1 410 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 RSPH14Q9UHP6 348 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 TTLL3Q9Y4R7 772 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 PRPF4O43172 522 aaKnown RBP eCLIP27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 PSMB4P28070 264 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 CNKSR3Q6P9H4 555 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 TTC9BQ8N6N2 239 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 SLC44A1Q8WWI5 657 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 SLC39A13Q96H72 371 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 FCRL2Q96LA5 508 aaPredicted RBP27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 SIK2Q9H0K1 926 aa27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 SSU72Q9NP77 194 aaKnown RBP27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 KLHL8Q9P2G9 620 aaPredicted RBP27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 SMG5Q9UPR3 1016 aaKnown RBP27.05■■□□□ 1.92
CCDC88C-205ENST00000553403 EFEMP2O95967 443 aa27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 DRD4P21917 467 aa27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 IKBKEQ14164 716 aa27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 MPP2Q14168 576 aa27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 RWDD4Q6NW29 188 aaKnown RBP27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 RSPO2Q6UXX9 243 aaPredicted RBP27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 RNF19BQ6ZMZ0 732 aa27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 TMEM173Q86WV6 379 aaPredicted RBP27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 BCL7CQ8WUZ0 217 aaPredicted RBP27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 FBXO32Q969P5 355 aa27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 C1orf74Q96LT6 269 aa27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 SMC6Q96SB8 1091 aa27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 OLA1Q9NTK5 396 aaKnown RBP27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 TBX21Q9UL17 535 aa27.04■■□□□ 1.92
CCDC88C-205ENST00000553403 FAM47DPA6NHR8 397 aa27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 VNN2O95498 520 aa27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 SRGAP2BP0DMP2 458 aa27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 PRKCHP24723 683 aa27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 RPL10AP62906 217 aaKnown RBP27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 TAS1R1Q7RTX1 841 aa27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 SPATS2Q86XZ4 545 aaKnown RBP27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 PDCD7Q8N8D1 485 aaKnown RBP27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 ANKRD42Q8N9B4 389 aa27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 STKLD1Q8NE28 680 aa27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 MRRFQ96E11 262 aaKnown RBP27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 SGSM3Q96HU1 749 aa27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 TSGA13Q96PP4 275 aa27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 PDE4DIPQ5VU43 2346 aa27.03■■□□□ 1.92
CCDC88C-205ENST00000553403 KCNK1O00180 336 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 APOEP02649 317 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 C1QAP02745 245 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 RFC2P35250 354 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 MGAT5BQ3V5L5 792 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 KBTBD12Q3ZCT8 623 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 ARTNQ5T4W7 220 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 ITPRIPL1Q6GPH6 555 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 LIN28BQ6ZN17 250 aaKnown RBP eCLIP27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 DYDC1Q8WWB3 177 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 CEP295NLQ96MC4 621 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 CEP41Q9BYV8 373 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 PLAC1Q9HBJ0 212 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 TLR8Q9NR97 1041 aaKnown RBP27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 GGA2Q9UJY4 613 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 NUDT5Q9UKK9 219 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 SLC27A5Q9Y2P5 690 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 PCDHA11Q9Y5I1 949 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 MICAL3Q7RTP6 2002 aa27.02■■□□□ 1.92
CCDC88C-205ENST00000553403 PBX3P40426 434 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 GRIA1P42261 906 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 ALDH7A1P49419 539 aaKnown RBP27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 MLLT6P55198 1093 aaPredicted RBP27.01■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms