RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 EIF2B5Q13144 721 aaKnown RBP6.22□□□□□ -1.41
SCFD1-208ENST00000553278 ALKBH1Q13686 389 aaKnown RBP6.22□□□□□ -1.41
SCFD1-208ENST00000553278 MED22Q15528 200 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 CYP2A13Q16696 494 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 SLC9B1Q4ZJI4 515 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 LRCH2Q5VUJ6 765 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 C1QL3Q5VWW1 255 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 TMEM88Q6PEY1 159 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 NCEH1Q6PIU2 408 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 TMPRSS6Q8IU80 811 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 KCTD6Q8NC69 237 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 NCSTNQ92542 709 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 CNOT9Q92600 299 aaKnown RBP6.22□□□□□ -1.41
SCFD1-208ENST00000553278 SMARCE1Q969G3 411 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.22□□□□□ -1.41
SCFD1-208ENST00000553278 CINPQ9BW66 212 aaPredicted RBP6.22□□□□□ -1.41
SCFD1-208ENST00000553278 RABEP2Q9H5N1 569 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 CEP72Q9P209 647 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 PCDHB2Q9Y5E7 798 aa6.22□□□□□ -1.41
SCFD1-208ENST00000553278 BICDL2A1A5D9 508 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 CAPN14A8MX76 684 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 GRXCR1A8MXD5 290 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 GCOM1H8Y6P7 765 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 SH2B2O14492 632 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 PMPCBO75439 489 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 RAD17O75943 681 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 HSP90AB1P08238 724 aaKnown RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 ELANEP08246 267 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 RARGP13631 454 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 MATN1P21941 496 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 GATA3P23771 443 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 ICAM3P32942 547 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 RPS6KA3P51812 740 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 SUMO2P61956 95 aaKnown RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 PRAMEP78395 509 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 TXNL4AP83876 142 aaKnown RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 PLIN5Q00G26 463 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 TMEM115Q12893 351 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 AIMP2Q13155 320 aaKnown RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 DNASE1L3Q13609 305 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 ARTNQ5T4W7 220 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 ZNF648Q5T619 568 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 TEDDM1Q5T9Z0 273 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 SLFN13Q68D06 897 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 CDC73Q6P1J9 531 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 FAM83HQ6ZRV2 1179 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 LRRC55Q6ZSA7 311 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 HTR3DQ70Z44 454 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 GDF7Q7Z4P5 450 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 GALNTL5Q7Z4T8 443 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 SNX32Q86XE0 403 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 ADGRF2Q8IZF7 708 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 B3GALNT2Q8NCR0 500 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 R3HDM4Q96D70 268 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 PERPQ96FX8 193 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 BOD1Q96IK1 185 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 CMTM3Q96MX0 182 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 NPLQ9BXD5 320 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 GPR87Q9BY21 358 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 CDCP1Q9H5V8 836 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 EPHX3Q9H6B9 360 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 SH2D4AQ9H788 454 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 TTC12Q9H892 705 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 GALNT9Q9HCQ5 603 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 TRPM5Q9NZQ8 1165 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 KLQ9UEF7 1012 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 SLCO3A1Q9UIG8 710 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 CHST2Q9Y4C5 530 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 SLC30A1Q9Y6M5 507 aa6.21□□□□□ -1.42
SCFD1-208ENST00000553278 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-208ENST00000553278 FAM237BA0A1B0GVD1 139 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 A0A1W2PQ09 198 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 CLGNO14967 610 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 PER2O15055 1255 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 CA12O43570 354 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 SPRY2O43597 315 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 CCNT1O60563 726 aaKnown RBP6.2□□□□□ -1.42
SCFD1-208ENST00000553278 ERBB2P04626 1255 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 PDHA1P08559 390 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 LYL1P12980 280 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 CYP4B1P13584 511 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 GKP32189 559 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 MCM5P33992 734 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 SLURP1P55000 103 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 OLR1P78380 273 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 EFNB1P98172 346 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 BMP2KLQ5H9B9 411 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 LCE1DQ5T752 114 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 B3GNTL1Q67FW5 361 aaPredicted RBP6.2□□□□□ -1.42
SCFD1-208ENST00000553278 KLHL35Q6PF15 583 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 ATG14Q6ZNE5 492 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 SGMS1Q86VZ5 419 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 TMEM151BQ8IW70 566 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 ENDOVQ8N8Q3 282 aaKnown RBP6.2□□□□□ -1.42
SCFD1-208ENST00000553278 PNPLA1Q8N8W4 532 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 SRFBP1Q8NEF9 429 aaKnown RBP6.2□□□□□ -1.42
SCFD1-208ENST00000553278 TOR1AIP2Q8NFQ8 470 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 XAGE5Q8WWM1 108 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 INTS12Q96CB8 462 aaKnown RBP6.2□□□□□ -1.42
SCFD1-208ENST00000553278 GNRHR2Q96P88 292 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms