RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 TMC6Q7Z403 805 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 EXD3Q8N9H8 876 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 OR14C36Q8NHC7 312 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 MYEOVQ96EZ4 313 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 FAM129BQ96TA1 746 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 SLC39A2Q9NP94 309 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 UCKL1Q9NWZ5 548 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 ARHGAP20Q9P2F6 1191 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 TFIP11Q9UBB9 837 aaKnown RBP13.44□□□□□ -0.26
VPS29-211ENST00000553128 IL17BQ9UHF5 180 aa13.44□□□□□ -0.26
VPS29-211ENST00000553128 UBE4BO95155 1302 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 A0A1B0GVM2 712 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 PMS2P1A4D2B8 440 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 K7ENP7 123 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 TULP2O00295 520 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 LATO43561 262 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 OPA1O60313 960 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 TBL1XO60907 577 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 CSO75390 466 aaKnown RBP13.43□□□□□ -0.26
VPS29-211ENST00000553128 MAT2AP31153 395 aaKnown RBP13.43□□□□□ -0.26
VPS29-211ENST00000553128 SLC6A4P31645 630 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 LSSP48449 732 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 HARS2P49590 506 aaKnown RBP13.43□□□□□ -0.26
VPS29-211ENST00000553128 ERVPABLB-1P60509 514 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 NFKB2Q00653 900 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 NFATC3Q12968 1075 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 ZNF211Q13398 564 aaPredicted RBP13.43□□□□□ -0.26
VPS29-211ENST00000553128 ADGRF1Q5T601 910 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 NAPEPLDQ6IQ20 393 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 INO80CQ6PI98 192 aaPredicted RBP13.43□□□□□ -0.26
VPS29-211ENST00000553128 MMS22LQ6ZRQ5 1243 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 PIGZQ86VD9 579 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 OXR1Q8N573 874 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 MFSD2AQ8NA29 543 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 EDEM1Q92611 657 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 TTC17Q96AE7 1141 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 DPH1Q9BZG8 443 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 OSBPL2Q9H1P3 480 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 POLR1BQ9H9Y6 1135 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 FZD4Q9ULV1 537 aa13.43□□□□□ -0.26
VPS29-211ENST00000553128 FFAR2O15552 330 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 EIF5BO60841 1220 aaKnown RBP13.42□□□□□ -0.26
VPS29-211ENST00000553128 RNASEH1O60930 286 aaKnown RBP13.42□□□□□ -0.26
VPS29-211ENST00000553128 RPN1P04843 607 aaKnown RBP13.42□□□□□ -0.26
VPS29-211ENST00000553128 GIMD1P0DJR0 217 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 GOT1P17174 413 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 CSKP41240 450 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 PIK3CAP42336 1068 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 NUMBP49757 651 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 TKTL1P51854 596 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 DAB2P98082 770 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 KNOP1Q1ED39 458 aaKnown RBP13.42□□□□□ -0.26
VPS29-211ENST00000553128 PIK3R6Q5UE93 754 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 STK40Q8N2I9 435 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 ARHGAP18Q8N392 663 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 TAF4BQ92750 862 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 DHX58Q96C10 678 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 USP28Q96RU2 1077 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 ULBP1Q9BZM6 244 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 BLZF1Q9H2G9 400 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 DMAC2Q9NW81 257 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 STIM2Q9P246 746 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 SLCO3A1Q9UIG8 710 aa13.42□□□□□ -0.26
VPS29-211ENST00000553128 TBC1D3DA0A087WVF3 549 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 TBC1D3IA0A087WXS9 549 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 TBC1D3EA0A087X179 549 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 TBC1D3KA0A087X1G2 549 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 LY6G6EA0A0G2JKS1 128 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 TBC1D3FA6NER0 549 aaPredicted RBP13.41□□□□□ -0.26
VPS29-211ENST00000553128 TBC1D3LB9A6J9 549 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 TERTO14746 1132 aaKnown RBP13.41□□□□□ -0.26
VPS29-211ENST00000553128 RTN2O75298 545 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 ZBED1O96006 694 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 TBC1D3HP0C7X1 549 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 DGKAP23743 735 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 DRD3P35462 400 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 ST8SIA6P61647 398 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 SKOR1P84550 965 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 SLC39A14Q15043 492 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 RABEP1Q15276 862 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 POM121L1PQ3SYA9 428 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 SLC45A4Q5BKX6 768 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 FAM133BQ5BKY9 247 aaKnown RBP13.41□□□□□ -0.26
VPS29-211ENST00000553128 FSCBQ5H9T9 825 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 C3orf38Q5JPI3 329 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 TBC1D3GQ6DHY5 549 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 PM20D1Q6GTS8 502 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 TBC1D3CQ6IPX1 549 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 CNNM4Q6P4Q7 775 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.41□□□□□ -0.26
VPS29-211ENST00000553128 UNC13DQ70J99 1090 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 SND1Q7KZF4 910 aaKnown RBP eCLIP13.41□□□□□ -0.262e-8■■■□□ 17.3
VPS29-211ENST00000553128 MFN1Q8IWA4 741 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 TBC1D3Q8IZP1 549 aaPredicted RBP13.41□□□□□ -0.26
VPS29-211ENST00000553128 LSMEM2Q8N112 164 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 OR4C6Q8NH72 309 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 TAS1R2Q8TE23 839 aa13.41□□□□□ -0.26
VPS29-211ENST00000553128 HEXIM2Q96MH2 286 aaKnown RBP13.41□□□□□ -0.26
VPS29-211ENST00000553128 PRICKLE1Q96MT3 831 aaPredicted RBP13.41□□□□□ -0.26
VPS29-211ENST00000553128 DEPDC7Q96QD5 511 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms