RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ZDHHC24Q6UX98 284 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 UNC5AQ6ZN44 842 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 CARNMT1Q8N4J0 409 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 MYLPFQ96A32 169 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 PTPRHQ9HD43 1115 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 TMEM39AQ9NV64 488 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 APOA4P06727 396 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 ABHD2P08910 425 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 HOXC6P09630 235 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 NOVP48745 357 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 OXCT1P55809 520 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 PARP6Q2NL67 630 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 PPP1R2P1Q96PQ5 205 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 CACYBPQ9HB71 228 aaKnown RBP16.65■□□□□ 0.26
CUX1-213ENST00000549414 MRPL40Q9NQ50 206 aaKnown RBP16.65■□□□□ 0.26
CUX1-213ENST00000549414 DYRK4Q9NR20 520 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 NR2E3Q9Y5X4 410 aa16.65■□□□□ 0.26
CUX1-213ENST00000549414 PRR23AA6NEV1 266 aa16.64■□□□□ 0.26
CUX1-213ENST00000549414 PAPSS1O43252 624 aaPredicted RBP16.64■□□□□ 0.26
CUX1-213ENST00000549414 DCXO43602 365 aa16.64■□□□□ 0.26
CUX1-213ENST00000549414 SERPINE1P05121 402 aa16.64■□□□□ 0.26
CUX1-213ENST00000549414 CCL23P55773 120 aa16.64■□□□□ 0.26
CUX1-213ENST00000549414 NBPF20Q3BBV1 942 aa16.64■□□□□ 0.26
CUX1-213ENST00000549414 PDPK2PQ6A1A2 396 aa16.64■□□□□ 0.26
CUX1-213ENST00000549414 ZC3H15Q8WU90 426 aaKnown RBP16.64■□□□□ 0.26
CUX1-213ENST00000549414 TWNKQ96RR1 684 aa16.64■□□□□ 0.26
CUX1-213ENST00000549414 FAM105AQ9NUU6 356 aa16.64■□□□□ 0.26
CUX1-213ENST00000549414 CD151P48509 253 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 FNBP1LQ5T0N5 605 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 C16orf89Q6UX73 402 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 PYROXD2Q8N2H3 581 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 PLD5Q8N7P1 536 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 DCUN1D1Q96GG9 259 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 CACNG4Q9UBN1 327 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 VPS28Q9UK41 221 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 MYH3P11055 1940 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 ASMTLO95671 621 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 FLT3LGP49771 235 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 GDF10P55107 478 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 MRPS5P82675 430 aaKnown RBP16.64■□□□□ 0.25
CUX1-213ENST00000549414 NOMO1Q15155 1222 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 DEFB107AQ8IZN7 70 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 P2RY11Q96G91 374 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 FBXL18Q96ME1 805 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 CATSPER2Q96P56 530 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 THAP1Q9NVV9 213 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 TAGLN3Q9UI15 199 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 PTPRJQ12913 1337 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 A0A0G2JLL6 359 aaPredicted RBP16.64■□□□□ 0.25
CUX1-213ENST00000549414 HACD1B0YJ81 288 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 TRIM13O60858 407 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 C22orf31O95567 290 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 ELNP15502 786 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 ATP4AP20648 1035 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 YWHAQP27348 245 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 VHLP40337 213 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 RAB27AP51159 221 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 PDK4Q16654 411 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 PRRT2Q7Z6L0 340 aaPredicted RBP16.64■□□□□ 0.25
CUX1-213ENST00000549414 TMEM86AQ8N2M4 240 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 USP13Q92995 863 aaPredicted RBP16.64■□□□□ 0.25
CUX1-213ENST00000549414 EBNA1BP2Q99848 306 aaKnown RBP16.64■□□□□ 0.25
CUX1-213ENST00000549414 CRLS1Q9UJA2 301 aa16.64■□□□□ 0.25
CUX1-213ENST00000549414 TTLL13PA6NNM8 815 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 PDE5AO76074 875 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 MTA2O94776 668 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 LRG1P02750 347 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 RHOCP08134 193 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 LMO2P25791 158 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 CRYBB1P53674 252 aaPredicted RBP16.63■□□□□ 0.25
CUX1-213ENST00000549414 FAM35AQ86V20 835 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 LRRC39Q96DD0 335 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 FZD8Q9H461 694 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 TCF7L2Q9NQB0 619 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 TRPM5Q9NZQ8 1165 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 CRYL1Q9Y2S2 319 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 TRDMT1O14717 391 aaKnown RBP16.63■□□□□ 0.25
CUX1-213ENST00000549414 DNAJC8O75937 253 aaPredicted RBP16.63■□□□□ 0.25
CUX1-213ENST00000549414 RENBPP51606 427 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 HADHBP55084 474 aaKnown RBP16.63■□□□□ 0.25
CUX1-213ENST00000549414 ELF3P78545 371 aaPredicted RBP16.63■□□□□ 0.25
CUX1-213ENST00000549414 SLC1A5Q15758 541 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 ZNF572Q7Z3I7 529 aaPredicted RBP16.63■□□□□ 0.25
CUX1-213ENST00000549414 PSTKQ8IV42 348 aaKnown RBP16.63■□□□□ 0.25
CUX1-213ENST00000549414 TNS4Q8IZW8 715 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 BORCS6Q96GS4 357 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 CSPG4P5Q96PW8 444 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 FBXO6Q9NRD1 293 aaPredicted RBP16.63■□□□□ 0.25
CUX1-213ENST00000549414 RRN3Q9NYV6 651 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 NCKIPSDQ9NZQ3 722 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 SFMBT1Q9UHJ3 866 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 TRMT6Q9UJA5 497 aaKnown RBP16.63■□□□□ 0.25
CUX1-213ENST00000549414 TRHDEQ9UKU6 1024 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 RP1L1Q8IWN7 2480 aaPredicted RBP16.63■□□□□ 0.25
CUX1-213ENST00000549414 ESRRBO95718 433 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 ALADP13716 330 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 POU4F1Q01851 419 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 CMC1Q7Z7K0 106 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 HS6ST3Q8IZP7 471 aa16.63■□□□□ 0.25
CUX1-213ENST00000549414 NKD2Q969F2 451 aaPredicted RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms