RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 GSCP56915 257 aaPredicted RBP12.21□□□□□ -0.45
HDAC4-216ENST00000544989 RNASE9P60153 205 aaKnown RBP12.21□□□□□ -0.45
HDAC4-216ENST00000544989 RPS24P62847 133 aaKnown RBP12.21□□□□□ -0.45
HDAC4-216ENST00000544989 FMO1Q01740 532 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 SULT2A1Q06520 285 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 SFSWAPQ12872 951 aaKnown RBP12.21□□□□□ -0.45
HDAC4-216ENST00000544989 NME3Q13232 169 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 MAP7D1Q3KQU3 841 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 RAP1GAP2Q684P5 730 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 PRR23CQ6ZRP0 262 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 CYP2U1Q7Z449 544 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 ADIPOR2Q86V24 386 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 CARNMT1Q8N4J0 409 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 TTC17Q96AE7 1141 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 PRICKLE1Q96MT3 831 aaPredicted RBP12.21□□□□□ -0.45
HDAC4-216ENST00000544989 NPY6RQ99463 290 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 ARRDC1-AS1Q9H2J1 176 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 WDCPQ9H6R7 721 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 PRDM16Q9HAZ2 1276 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 CD248Q9HCU0 757 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 ZDHHC4Q9NPG8 344 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 COX16Q9P0S2 106 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 CDV3Q9UKY7 258 aaKnown RBP12.21□□□□□ -0.45
HDAC4-216ENST00000544989 DCLK1O15075 740 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 NDUFS2O75306 463 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 CLDN11O75508 207 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 SERPINC1P01008 464 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 SRPRAP08240 638 aaKnown RBP12.2□□□□□ -0.46
HDAC4-216ENST00000544989 ACADMP11310 421 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 NNMTP40261 264 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 CXCR3P49682 368 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 SULT1E1P49888 294 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 SGSHP51688 502 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 CREB5Q02930 508 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 CENPCQ03188 943 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 ZBTB16Q05516 673 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 DEUP1Q05D60 604 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 FUT11Q495W5 492 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 AASDHQ4L235 1098 aaPredicted RBP12.2□□□□□ -0.46
HDAC4-216ENST00000544989 PLA2G2CQ5R387 149 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 RNF219Q5W0B1 726 aaPredicted RBP12.2□□□□□ -0.46
HDAC4-216ENST00000544989 TMEM215Q68D42 235 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 KIAA1211LQ6NV74 962 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 LRRC31Q6UY01 552 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 OR2T3Q8NH03 318 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 SLC20A1Q8WUM9 679 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 PRCCQ92733 491 aaPredicted RBP12.2□□□□□ -0.46
HDAC4-216ENST00000544989 FOXJ1Q92949 421 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 IQCDQ96DY2 449 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 SIPA1Q96FS4 1042 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 MRGPRX1Q96LB2 322 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 C1orf74Q96LT6 269 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 RPRD1AQ96P16 312 aaPredicted RBP12.2□□□□□ -0.46
HDAC4-216ENST00000544989 PRMT1Q99873 361 aaKnown RBP12.2□□□□□ -0.46
HDAC4-216ENST00000544989 RTKNQ9BST9 563 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 FUCA2Q9BTY2 467 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 EDEM3Q9BZQ6 932 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 TMEM245Q9H330 911 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 PARD6AQ9NPB6 346 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 ARHGEF38Q9NXL2 777 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 TMEM59LQ9UK28 342 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 RAD54BQ9Y620 910 aa12.2□□□□□ -0.46
HDAC4-216ENST00000544989 PLXND1Q9Y4D7 1925 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 A0A1B0GTH6 734 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 SYCE3A1L190 88 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 ANKRD62A6NC57 917 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 WASH3PC4AMC7 463 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 GOLGA6L19H0YKK7 550 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 GOLGA8SH3BPF8 625 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 C7P10643 843 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 UNGP13051 313 aaPredicted RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 SDC4P31431 198 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 CD70P32970 193 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 RDXP35241 583 aaKnown RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 CSKP41240 450 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 DHPSP49366 369 aaPredicted RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 LIMK1P53667 647 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 CDH4P55283 916 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 PITX1P78337 314 aaPredicted RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 RPL6Q02878 288 aaKnown RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 C1QBPQ07021 282 aaKnown RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 LMAN2Q12907 356 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 ZNF177Q13360 481 aaPredicted RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 CAMK2GQ13555 558 aaPredicted RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 AUHQ13825 339 aaKnown RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 ARID5BQ14865 1188 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 IQCB1Q15051 598 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 CLEC16AQ2KHT3 1053 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 ARL13BQ3SXY8 428 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 C5orf22Q49AR2 442 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 PITRM1Q5JRX3 1037 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 SYCP2LQ5T4T6 812 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 LYSMD4Q5XG99 296 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 LRSAM1Q6UWE0 723 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 KIAA1324Q6UXG2 1013 aaKnown RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 MMS22LQ6ZRQ5 1243 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 PHF13Q86YI8 300 aaPredicted RBP12.19□□□□□ -0.46
HDAC4-216ENST00000544989 TMPRSS6Q8IU80 811 aa12.19□□□□□ -0.46
HDAC4-216ENST00000544989 CEP76Q8TAP6 659 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms