RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 C1QTNF9BB2RNN3 333 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 MED7O43513 233 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 SH3BP5O60239 455 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 OPHN1O60890 802 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 CBFA2T3O75081 653 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 ATP5BP06576 529 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 PROS1P07225 676 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 SYPP08247 313 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 C1QTNF9P0C862 333 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 TACR2P21452 398 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 SLC14A1Q13336 389 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 EXOC3L4Q17RC7 722 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 RAP1GAP2Q684P5 730 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 FAM124AQ86V42 546 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 MFN1Q8IWA4 741 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 DEFB106AQ8N104 65 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 ZCCHC9Q8N567 271 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 KDM1BQ8NB78 822 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 GOLGA1Q92805 767 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 GATA6Q92908 595 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 ALG14Q96F25 216 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 SCNM1Q9BWG6 230 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 PCED1AQ9H1Q7 454 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 SUSD2Q9UGT4 822 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 SUN2Q9UH99 717 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 EIF2B4Q9UI10 523 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 SLCO3A1Q9UIG8 710 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 ERVW-1Q9UQF0 538 aa12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.23□□□□□ -0.45
CLSTN3-211ENST00000541667 I6L893 689 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 BCAT2O15382 392 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 SIN3BO75182 1162 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 LUC7L3O95232 432 aaKnown RBP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 MOCS2O96007 188 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 ERBB2P04626 1255 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 CAPNS1P04632 268 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 GLI1P08151 1106 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 PNMA6AP0CW24 399 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 ACADMP11310 421 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 GNSP15586 552 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 ATXN3P54252 364 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 ARID5AQ03989 594 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 ZBTB16Q05516 673 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 HNRNPA1L2Q32P51 320 aaKnown RBP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 DPCR1Q3MIW9 517 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 PITRM1Q5JRX3 1037 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 KCNT1Q5JUK3 1230 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 OTUD1Q5VV17 481 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 SLC47A2Q86VL8 602 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 CREBRFQ8IUR6 639 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 FAM71AQ8IYT1 594 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 LGI2Q8N0V4 545 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 CARNMT1Q8N4J0 409 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 HDDC3Q8N4P3 179 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 KDF1Q8NAX2 398 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 OR52K2Q8NGK3 314 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 BIRC7Q96CA5 298 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 PPP1R13BQ96KQ4 1090 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 BTN2A3PQ96KV6 586 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 FAM81BQ96LP2 452 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 DDX50Q9BQ39 737 aaKnown RBP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 ZDHHC5Q9C0B5 715 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 CLSTN2Q9H4D0 955 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 SLC32A1Q9H598 525 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 FBRSQ9HAH7 460 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 EBF2Q9HAK2 575 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 OSGEPQ9NPF4 335 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 ANLNQ9NQW6 1124 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 ASNSD1Q9NWL6 643 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 CHMP5Q9NZZ3 219 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 KIAA1522Q9P206 1035 aaPredicted RBP12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 SERGEFQ9UGK8 458 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 DNAJC12Q9UKB3 198 aa12.22□□□□□ -0.45
CLSTN3-211ENST00000541667 ITIH6Q6UXX5 1313 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 TTC34A8MYJ7 566 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 CAPN9O14815 690 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 ZZEF1O43149 2961 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 HYAL3O43820 417 aaPredicted RBP12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 ASLP04424 464 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 IGHV4-34P06331 123 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 MZF1P28698 734 aaPredicted RBP12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 USP8P40818 1118 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 CSNK1EP49674 416 aaKnown RBP12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 IRAK1P51617 712 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 PLK1P53350 603 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 SIM1P81133 766 aaPredicted RBP12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 HLA-BQ31612 363 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 C5orf22Q49AR2 442 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 PTPN20Q4JDL3 420 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 VWA3BQ502W6 1294 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 CXorf57Q6NSI4 855 aaKnown RBP12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 FBXL22Q6P050 247 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 OLFML1Q6UWY5 402 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 FAM183BPQ6ZVS7 135 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 PASD1Q8IV76 773 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 ZNF557Q8N988 423 aaPredicted RBP12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 PTPRN2Q92932 1015 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 IGSF8Q969P0 613 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 NAA15Q9BXJ9 866 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms