RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 DLG3Q92796 817 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 MASTLQ96GX5 879 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 KPNA7A9QM74 516 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 ASS1P00966 412 aaKnown RBP13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 ALOX15P16050 662 aaPredicted RBP13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 PORP16435 677 aaPredicted RBP13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 PRDX6P30041 224 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 HMOX2P30519 316 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 RPS6P62753 249 aaKnown RBP13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 MS4A2Q01362 244 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 RNF157Q96PX1 679 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 FEM1BQ9UK73 627 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 FIS1Q9Y3D6 152 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 ABCG1P45844 678 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 ANKDD1AQ495B1 522 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 OLFML1Q6UWY5 402 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 NIPA1Q7RTP0 329 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 PLD5Q8N7P1 536 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 RIN3Q8TB24 985 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 ACMSDQ8TDX5 336 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 TSNARE1Q96NA8 513 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 CIB1Q99828 191 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 ILKAPQ9H0C8 392 aaPredicted RBP13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 EFCAB1Q9HAE3 211 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 ARHGAP28Q9P2N2 729 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 MYO18AQ92614 2054 aaKnown RBP13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 RNASEH2AO75792 299 aaKnown RBP13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 METTL18O95568 372 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 ERBB2P04626 1255 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 TNFSF9P41273 254 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 C21orf59P57076 290 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 CEACAM7Q14002 265 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 EMC2Q15006 297 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 IL23RQ5VWK5 629 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 FAM47BQ8NA70 645 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 RNF169Q8NCN4 708 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 MAPK15Q8TD08 544 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 SYTL5Q8TDW5 730 aaPredicted RBP13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 VPS50Q96JG6 964 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 SCYL1Q96KG9 808 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 COX4I2Q96KJ9 171 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 SIGLEC10Q96LC7 697 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 BRD8Q9H0E9 1235 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 SEPT10Q9P0V9 454 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 AP4S1Q9Y587 144 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 FOCADQ5VW36 1801 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 CROCCQ5TZA2 2017 aa13.15□□□□□ -0.3
SFSWAP-209ENST00000540469 C1QAP02745 245 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 PSAPP07602 524 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 ZNF24P17028 368 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 GPD1P21695 349 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 HSD17B4P51659 736 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 DUOXA2Q1HG44 320 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 MAP7D1Q3KQU3 841 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 SEL1L3Q68CR1 1132 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 HEATR6Q6AI08 1181 aaKnown RBP13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 TTC33Q6PID6 262 aaPredicted RBP13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 CYP2R1Q6VVX0 501 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 CDKL3Q8IVW4 592 aaPredicted RBP13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 PCDH20Q8N6Y1 951 aaKnown RBP13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 UBA3Q8TBC4 463 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 RXFP2Q8WXD0 754 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 PEBP4Q96S96 227 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 NPAS2Q99743 824 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 PNPLA3Q9NST1 481 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 EBF1Q9UH73 591 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 COQ6Q9Y2Z9 468 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 ICAM1P05362 532 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 CD1EP15812 388 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 ARRB2P32121 409 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 ZNF132P52740 706 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 NDST2P52849 883 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 CDH8P55286 799 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 PGM5Q15124 567 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 RAB6CQ53S08 254 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 TMEM198Q66K66 360 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 KBTBD7Q8WVZ9 684 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 LRTOMTQ8WZ04 291 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 MOCOSQ96EN8 888 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 OSBPL11Q9BXB4 747 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 RAB6CQ9H0N0 254 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 CNTN6Q9UQ52 1028 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 PSAT1Q9Y617 370 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 TMEM221A6NGB7 291 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 PSMD12O00232 456 aaPredicted RBP13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 F7P08709 466 aaPredicted RBP13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 ERVK-10P10266 1014 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 MPSTP25325 297 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 ZBTB49Q6ZSB9 765 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 XYLT1Q86Y38 959 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 ALDH16A1Q8IZ83 802 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 RP9Q8TA86 221 aaKnown RBP13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 FNIP1Q8TF40 1166 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 EFHD1Q9BUP0 239 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 TSC22D4Q9Y3Q8 395 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 PCDHB12Q9Y5F1 795 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 NR2E3Q9Y5X4 410 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 SQORQ9Y6N5 450 aa13.14□□□□□ -0.31
SFSWAP-209ENST00000540469 AKAP10O43572 662 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 TNNC2P02585 160 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 139.9 ms