RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 BHLHA9Q7RTU4 235 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 KANSL1Q7Z3B3 1105 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 ZNF557Q8N988 423 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 MFSD2AQ8NA29 543 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 ANKRD52Q8NB46 1076 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 KDM1BQ8NB78 822 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 WFDC5Q8TCV5 224 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 TAS1R2Q8TE23 839 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 RNF139Q8WU17 664 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 NDRG1Q92597 394 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 LMLNQ96KR4 655 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 ZNF578Q96N58 590 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 ULBP1Q9BZM6 244 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 KCTD10Q9H3F6 313 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 MTMR6Q9Y217 621 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 FRMD4BQ9Y2L6 1034 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 COL6A6A6NMZ7 2263 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 TARSL2A2RTX5 802 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 B8ZZF3 427 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 MAPK13O15264 365 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 IRAK2O43187 625 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 MT-CO3P00414 261 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 ASLP04424 464 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 GOT1P17174 413 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 AFMP43652 599 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 GCLMP48507 274 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 PCBP4P57723 403 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 TMPRSS3P57727 454 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 PROX2Q3B8N5 592 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 BSPRYQ5W0U4 402 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 ARHGAP17Q68EM7 881 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 KDM7AQ6ZMT4 941 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 SND1Q7KZF4 910 aaKnown RBP eCLIP12.08□□□□□ -0.481e-8■■■■□ 21.7
CLSTN3-209ENST00000539982 SPATS2Q86XZ4 545 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 MMAAQ8IVH4 418 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 DHX40Q8IX18 779 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 TTC39CQ8N584 583 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 SLC4A11Q8NBS3 891 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 CCDC150Q8NCX0 1101 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 FIBINQ8TAL6 211 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 EDEM1Q92611 657 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 FAXDC2Q96IV6 333 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 HIC2Q96JB3 615 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 MRGPRX3Q96LB0 322 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 CLMPQ9H6B4 373 aa12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 ARID1BQ8NFD5 2236 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-209ENST00000539982 TBC1D3DA0A087WVF3 549 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 TBC1D3IA0A087WXS9 549 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 TBC1D3EA0A087X179 549 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 TBC1D3KA0A087X1G2 549 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 GOLGA6L7A0A1B0GV03 622 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 TBC1D3FA6NER0 549 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 TBC1D3LB9A6J9 549 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 LATO43561 262 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 KLRC4O43908 158 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 TBC1D3HP0C7X1 549 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 PDIA4P13667 645 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 C6P13671 934 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 CSKP41240 450 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 RAD23BP54727 409 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 KCNC4Q03721 635 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 PPP3CAQ08209 521 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 ZNF211Q13398 564 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 ARHGAP40Q5TG30 622 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 TBC1D3GQ6DHY5 549 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 TBC1D3CQ6IPX1 549 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 RFWD3Q6PCD5 774 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 IQCHQ86VS3 1027 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 MFN1Q8IWA4 741 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 TBC1D3Q8IZP1 549 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 LSMEM2Q8N112 164 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 AADATQ8N5Z0 425 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 FAM181AQ8N9Y4 354 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 KIAA0895Q8NCT3 520 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 OR14C36Q8NHC7 312 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 NAF1Q96HR8 494 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 FAM129BQ96TA1 746 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 LRRC4Q9HBW1 653 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 CPNE5Q9HCH3 593 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 CISHQ9NSE2 258 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 ABCC13Q9NSE7 274 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 INTS6Q9UL03 887 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 ERVW-1Q9UQF0 538 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 HECTD1Q9ULT8 2610 aa12.07□□□□□ -0.48
CLSTN3-209ENST00000539982 EDDM13A0A1B0GTR0 161 aa12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 YJEFN3A6XGL0 299 aa12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 TTC34A8MYJ7 566 aa12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 E7ENQ6 273 aa12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 TULP2O00295 520 aa12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 XPO1O14980 1071 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 MSI1O43347 362 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 SIGLEC6O43699 453 aa12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 CALUO43852 315 aaPredicted RBP12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 MAGEC1O60732 1142 aa12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 SRPRAP08240 638 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 C5AR1P21730 350 aa12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 SLC6A4P31645 630 aa12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 SLC11A2P49281 568 aa12.06□□□□□ -0.48
CLSTN3-209ENST00000539982 ADPRHP54922 357 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms