RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SYBUQ9NX95 663 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 UBAP1Q9NZ09 502 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 BCAP29Q9UHQ4 241 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 KPNA7A9QM74 516 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 ACKR2O00590 384 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 USP12O75317 370 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 TNFAIP8O95379 198 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 TFAP2AP05549 437 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 XRCC1P18887 633 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 PIK3R1P27986 724 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 EPHA3P29320 983 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 GP5P40197 560 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 ARL4AP40617 200 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 GK3PQ14409 553 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 DBN1Q16643 649 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 OGFRL1Q5TC84 451 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 C16orf89Q6UX73 402 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 DCLK2Q8N568 766 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 DNAAF3Q8N9W5 541 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 ZNF280CQ8ND82 737 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 BHLHE22Q8NFJ8 381 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 ZNF669Q96BR6 464 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 SCYL1Q96KG9 808 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 MARK4Q96L34 752 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 PRICKLE1Q96MT3 831 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 CAB39LQ9H9S4 337 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 BARX2Q9UMQ3 279 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 PCDHGB4Q9UN71 923 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 PHF24Q9UPV7 400 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 PCDHGB5Q9Y5G0 923 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 IL18RAPO95256 599 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 AMHP03971 560 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 ZFXP17010 805 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 SCNN1BP51168 640 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 THOP1P52888 689 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 INHBCP55103 352 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 SNAPC2Q13487 334 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 TARBP2Q15633 366 aaKnown RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 DLG2Q15700 870 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 TMEM259Q4ZIN3 620 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 STRA8Q7Z7C7 330 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 NCAPG2Q86XI2 1143 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 TRIML2Q8N7C3 387 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 MAPK15Q8TD08 544 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 RCN3Q96D15 328 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 TSNARE1Q96NA8 513 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 WRNIP1Q96S55 665 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 GGA3Q9NZ52 723 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 STK39Q9UEW8 545 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 GNEQ9Y223 722 aaKnown RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 ARHGAP10A1A4S6 786 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 CCDC78A2IDD5 438 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 STRNO43815 780 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 PEX1O43933 1283 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 POLBP06746 335 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 SMIM18P0DKX4 95 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 PGAM1P18669 254 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 CYP3A5P20815 502 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 MAGEA6P43360 314 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 IFRD2Q12894 506 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 LY6KQ17RY6 165 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 NBPF12Q5TAG4 269 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 DSELQ8IZU8 1212 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 PLD6Q8N2A8 252 aaKnown RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 CATSPER2Q96P56 530 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 NUF2Q9BZD4 464 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 ILKAPQ9H0C8 392 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 QTRT2Q9H974 415 aaKnown RBP11.53□□□□□ -0.56
SYNE1-237ENST00000539504 AS3MTQ9HBK9 375 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 LMCD1Q9NZU5 365 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 PCDHB12Q9Y5F1 795 aa11.53□□□□□ -0.56
SYNE1-237ENST00000539504 A0A096LPK6 155 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 A0A0A0MRY4 1105 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 GPR25O00155 361 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 FARP2O94887 1054 aaPredicted RBP11.52□□□□□ -0.56
SYNE1-237ENST00000539504 FAM58BPP0C7Q3 252 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 LCP1P13796 627 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 CD1EP15812 388 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 MPSTP25325 297 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 PSMB4P28070 264 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 MAGEA3P43357 314 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 SLC6A3Q01959 620 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 OLIG2Q13516 323 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 SEMA5AQ13591 1074 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 CYLC2Q14093 348 aaPredicted RBP11.52□□□□□ -0.56
SYNE1-237ENST00000539504 STXBP5Q5T5C0 1151 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 PID1Q7Z2X4 250 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 ZSCAN18Q8TBC5 510 aaPredicted RBP11.52□□□□□ -0.56
SYNE1-237ENST00000539504 SPATA13Q96N96 652 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 PHF12Q96QT6 1004 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 VPS33BQ9H267 617 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 CYP3A43Q9HB55 503 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 ADA2Q9NZK5 511 aa11.52□□□□□ -0.56
SYNE1-237ENST00000539504 RNF103O00237 685 aa11.52□□□□□ -0.57
SYNE1-237ENST00000539504 IRF6O14896 467 aa11.52□□□□□ -0.57
SYNE1-237ENST00000539504 CASQ2O14958 399 aaPredicted RBP11.52□□□□□ -0.57
SYNE1-237ENST00000539504 TRIM13O60858 407 aa11.52□□□□□ -0.57
SYNE1-237ENST00000539504 GOT1P17174 413 aa11.52□□□□□ -0.57
SYNE1-237ENST00000539504 NELFEP18615 380 aaKnown RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms