RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 FBXO36Q8NEA4 188 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 DUS3LQ96G46 650 aaKnown RBP12.72□□□□□ -0.37
USP3-203ENST00000538686 BEGAINQ9BUH8 593 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 EMILIN2Q9BXX0 1053 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 MKRN2Q9H000 416 aaKnown RBP12.72□□□□□ -0.37
USP3-203ENST00000538686 ZHX3Q9H4I2 956 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 SYTL2Q9HCH5 934 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 GIMAP4Q9NUV9 329 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 FARP1Q9Y4F1 1045 aaPredicted RBP12.72□□□□□ -0.37
USP3-203ENST00000538686 SNCAIPQ9Y6H5 919 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 MAU2Q9Y6X3 613 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 SPATA31A5Q5VU36 1347 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 SPATA31A7Q8IWB4 1347 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 RGPD8O14715 1765 aaPredicted RBP12.72□□□□□ -0.37
USP3-203ENST00000538686 ARHGEF15O94989 841 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 NELFEP18615 380 aaKnown RBP12.71□□□□□ -0.37
USP3-203ENST00000538686 RPL17P18621 184 aaKnown RBP12.71□□□□□ -0.37
USP3-203ENST00000538686 GARTP22102 1010 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 CRHR1P34998 444 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 NUDT2P50583 147 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 AP2S1P53680 142 aaPredicted RBP12.71□□□□□ -0.37
USP3-203ENST00000538686 RAD51Q06609 339 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 BST2Q10589 180 aaKnown RBP12.71□□□□□ -0.37
USP3-203ENST00000538686 KLF10Q13118 480 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 PPIL2Q13356 520 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 KRR1Q13601 381 aaKnown RBP12.71□□□□□ -0.37
USP3-203ENST00000538686 POU6F1Q14863 301 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 ANO4Q32M45 955 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 CEP55Q53EZ4 464 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 FAM47AQ5JRC9 791 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 TRIM72Q6ZMU5 477 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 ZBTB49Q6ZSB9 765 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 DSG4Q86SJ6 1040 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 REM2Q8IYK8 340 aaPredicted RBP12.71□□□□□ -0.37
USP3-203ENST00000538686 DSELQ8IZU8 1212 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 PDIK1LQ8N165 341 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 ZCCHC7Q8N3Z6 543 aaKnown RBP12.71□□□□□ -0.37
USP3-203ENST00000538686 EFCAB3Q8N7B9 438 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 FLAD1Q8NFF5 587 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 CABLES1Q8TDN4 633 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 CDRT15Q96T59 188 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 BCL7BQ9BQE9 202 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 HEMGNQ9BXL5 484 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 TRPV6Q9H1D0 765 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 ATP13A2Q9NQ11 1180 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 COMMD8Q9NX08 183 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.71□□□□□ -0.37
USP3-203ENST00000538686 CAB39Q9Y376 341 aaPredicted RBP12.71□□□□□ -0.37
USP3-203ENST00000538686 PCDHGA8Q9Y5G5 932 aa12.71□□□□□ -0.37
USP3-203ENST00000538686 MN1Q10571 1320 aaPredicted RBP12.71□□□□□ -0.37
USP3-203ENST00000538686 LOC100653049A0A140TA62 436 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 CCDC195A0A1B0GUA6 201 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 GPR25O00155 361 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 EIF3DO15371 548 aaKnown RBP eCLIP12.71□□□□□ -0.38
USP3-203ENST00000538686 ZC3H11AO75152 810 aaKnown RBP eCLIP12.71□□□□□ -0.38
USP3-203ENST00000538686 KRT34O76011 436 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 TOMM70O94826 608 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 ITGAVP06756 1048 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 NCF2P19878 526 aaPredicted RBP12.71□□□□□ -0.38
USP3-203ENST00000538686 CASP3P42574 277 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 SERPINB10P48595 397 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 RAD23AP54725 363 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 DSTNP60981 165 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 ILF2Q12905 390 aaKnown RBP12.71□□□□□ -0.38
USP3-203ENST00000538686 DNASE1L3Q13609 305 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 RSBN1Q5VWQ0 802 aaPredicted RBP12.71□□□□□ -0.38
USP3-203ENST00000538686 TFAP2DQ7Z6R9 452 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 SLC22A16Q86VW1 577 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 RHPN2Q8IUC4 686 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 ZBTB38Q8NAP3 1195 aaPredicted RBP12.71□□□□□ -0.38
USP3-203ENST00000538686 RP9Q8TA86 221 aaKnown RBP12.71□□□□□ -0.38
USP3-203ENST00000538686 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.71□□□□□ -0.38
USP3-203ENST00000538686 PCDHB18PQ96TA0 734 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 SLC4A5Q9BY07 1137 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 ATP13A3Q9H7F0 1226 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 FBXO8Q9NRD0 319 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 DUS2Q9NX74 493 aaKnown RBP12.71□□□□□ -0.38
USP3-203ENST00000538686 KLQ9UEF7 1012 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 HMGXB4Q9UGU5 601 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 ZNF221Q9UK13 617 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 NOCTQ9UK39 431 aaKnown RBP12.71□□□□□ -0.38
USP3-203ENST00000538686 NUP50Q9UKX7 468 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 KIAA1024Q9UPX6 916 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 TCAF1Q9Y4C2 921 aa12.71□□□□□ -0.38
USP3-203ENST00000538686 RGSL1A5PLK6 1076 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 GOLGA8IPA6NC78 632 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 AURKAO14965 403 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 SLC37A4O43826 429 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 GAS7O60861 476 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 IMPDH1P20839 514 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 ETFBP38117 255 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 HLCSP50747 726 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 NKX2-5P52952 324 aaPredicted RBP12.7□□□□□ -0.38
USP3-203ENST00000538686 PRKAA2P54646 552 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 SLC12A3P55017 1021 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 PRAMEP78395 509 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 VAC14Q08AM6 782 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 NAB1Q13506 487 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.7□□□□□ -0.38
USP3-203ENST00000538686 SLFN13Q68D06 897 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms