RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 SPEM1Q8N4L4 309 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 DDX51Q8N8A6 666 aaKnown RBP eCLIP2.8□□□□□ -1.96
SKA3-207ENST00000536239 IQUBQ8NA54 791 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 LSM14AQ8ND56 463 aaKnown RBP2.8□□□□□ -1.96
SKA3-207ENST00000536239 C7orf57Q8NEG2 295 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 PPM1EQ8WY54 764 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 KIF1BPQ96EK5 621 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 URB1-AS1Q96HZ7 61 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 ZNF668Q96K58 619 aaPredicted RBP2.8□□□□□ -1.96
SKA3-207ENST00000536239 NT5C1BQ96P26 610 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 HIST1H2AAQ96QV6 131 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 HTATIP2Q9BUP3 242 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 ELOVL1Q9BW60 279 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 UBA5Q9GZZ9 404 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 ISCUQ9H1K1 167 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 DHX36Q9H2U1 1008 aaKnown RBP2.8□□□□□ -1.96
SKA3-207ENST00000536239 TASP1Q9H6P5 420 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 VEZTQ9HBM0 779 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 ABHD10Q9NUJ1 306 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 ASNSD1Q9NWL6 643 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 POLKQ9UBT6 870 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 SUN2Q9UH99 717 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 IPO11Q9UI26 975 aaKnown RBP2.8□□□□□ -1.96
SKA3-207ENST00000536239 UTS2RQ9UKP6 389 aa2.8□□□□□ -1.96
SKA3-207ENST00000536239 RB1CC1Q8TDY2 1594 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 MYOM3Q5VTT5 1437 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 RRBP1Q9P2E9 1410 aaKnown RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 USP19O94966 1318 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 CGNL1Q0VF96 1302 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 MBD3L4A6NDZ8 208 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 MBD3L3A6NE82 208 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 SRRM3A6NNA2 597 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 TMCO5BA8MYB1 307 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 INAFM1C9JVW0 142 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 PRYO14603 147 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 MDM4O15151 490 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 SNX2O60749 519 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 CAND2O75155 1236 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 RASSF9O75901 435 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 SMC2O95347 1197 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 BAG4O95429 457 aaKnown RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 IVLP07476 585 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 TNNT1P13805 278 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 EN2P19622 333 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 TAF6P49848 677 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 CDKN1CP49918 316 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 COPAP53621 1224 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 DLX5P56178 289 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 TPM4P67936 248 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 POU3F1Q03052 451 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 PDIA5Q14554 519 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 PGM5Q15124 567 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 RBBP5Q15291 538 aaKnown RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 ZNF672Q499Z4 452 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 FILIP1LQ4L180 1135 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 HSP90AB2PQ58FF8 381 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 C9orf57Q5W0N0 161 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 EGFLAMQ63HQ2 1017 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 ISM2Q6H9L7 571 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 SWSAP1Q6NVH7 229 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 CAVIN1Q6NZI2 390 aaKnown RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 PARM1Q6UWI2 310 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 SYT10Q6XYQ8 523 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 LIN28BQ6ZN17 250 aaKnown RBP eCLIP2.79□□□□□ -1.96
SKA3-207ENST00000536239 SRLQ86TD4 932 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 MICU3Q86XE3 530 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 DENND1CQ8IV53 801 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 P3H2Q8IVL5 708 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 C10orf67Q8IYJ2 551 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 MUC20Q8N307 709 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 ZNF397Q8NF99 534 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 CCDC26Q8TAB7 109 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 GOLGA5Q8TBA6 731 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 ZCRB1Q8TBF4 217 aaKnown RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 GJA10Q969M2 543 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 SYAP1Q96A49 352 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 AGAP3Q96P47 875 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 RNF26Q9BY78 433 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 MAF1Q9H063 256 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 IQCGQ9H095 443 aaKnown RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 PRKRIP1Q9H875 184 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 ZMAT3Q9HA38 289 aaKnown RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 PLAC1Q9HBJ0 212 aa2.79□□□□□ -1.96
SKA3-207ENST00000536239 CWC25Q9NXE8 425 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 CPSF2Q9P2I0 782 aaKnown RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 PLEKHB1Q9UF11 243 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 MAGED2Q9UNF1 606 aaPredicted RBP2.79□□□□□ -1.96
SKA3-207ENST00000536239 CLIP1P30622 1438 aa2.78□□□□□ -1.96
SKA3-207ENST00000536239 ROCK2O75116 1388 aaKnown RBP2.78□□□□□ -1.96
SKA3-207ENST00000536239 COL15A1P39059 1388 aa2.78□□□□□ -1.96
SKA3-207ENST00000536239 PLEKHG2Q9H7P9 1386 aa2.78□□□□□ -1.96
SKA3-207ENST00000536239 CADPSQ9ULU8 1353 aa2.78□□□□□ -1.96
SKA3-207ENST00000536239 SPATA31A5Q5VU36 1347 aa2.78□□□□□ -1.96
SKA3-207ENST00000536239 SPATA31A7Q8IWB4 1347 aa2.78□□□□□ -1.96
SKA3-207ENST00000536239 MAPK8IP3Q9UPT6 1336 aa2.78□□□□□ -1.96
SKA3-207ENST00000536239 TTC34A8MYJ7 566 aa2.78□□□□□ -1.96
SKA3-207ENST00000536239 PYCARD-AS1I3L0S3 204 aa2.78□□□□□ -1.96
SKA3-207ENST00000536239 KIF2AO00139 706 aaPredicted RBP2.78□□□□□ -1.96
SKA3-207ENST00000536239 PES1O00541 588 aaKnown RBP2.78□□□□□ -1.96
SKA3-207ENST00000536239 ATP8B1O43520 1251 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms