RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 RSPH9Q9H1X1 276 aaPredicted RBP17.43■□□□□ 0.38
CPSF1-207ENST00000531727 THAP9Q9H5L6 903 aa17.43■□□□□ 0.38
CPSF1-207ENST00000531727 XPO7Q9UIA9 1087 aaKnown RBP17.43■□□□□ 0.38
CPSF1-207ENST00000531727 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.43■□□□□ 0.38
CPSF1-207ENST00000531727 CACNA1EQ15878 2313 aa17.43■□□□□ 0.38
CPSF1-207ENST00000531727 PCNX2A6NKB5 2137 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 TMEM8BA6NDV4 472 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 LUC7L3O95232 432 aaKnown RBP17.42■□□□□ 0.38
CPSF1-207ENST00000531727 SEMA4FO95754 770 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 CER1O95813 267 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 TRUB2O95900 331 aaKnown RBP17.42■□□□□ 0.38
CPSF1-207ENST00000531727 USP8P40818 1118 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 UBE2HP62256 183 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 ARID5BQ14865 1188 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 TRIP6Q15654 476 aaKnown RBP17.42■□□□□ 0.38
CPSF1-207ENST00000531727 CAMK4Q16566 473 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 ARHGAP44Q17R89 818 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 ZNF423Q2M1K9 1284 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 ZC3H12AQ5D1E8 599 aaKnown RBP17.42■□□□□ 0.38
CPSF1-207ENST00000531727 CREBRFQ8IUR6 639 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 LGI2Q8N0V4 545 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 KDF1Q8NAX2 398 aaPredicted RBP17.42■□□□□ 0.38
CPSF1-207ENST00000531727 KDM1BQ8NB78 822 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 BTN2A3PQ96KV6 586 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 MRGPRX3Q96LB0 322 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 MTG2Q9H4K7 406 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 IL21RQ9HBE5 538 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 SGK2Q9HBY8 427 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 APEX2Q9UBZ4 518 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 TJP2Q9UDY2 1190 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 KLK13Q9UKR3 277 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 SCML1Q9UN30 329 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 MSRB2Q9Y3D2 182 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 PCDHB9Q9Y5E1 797 aa17.42■□□□□ 0.38
CPSF1-207ENST00000531727 GTPBP10A4D1E9 387 aaKnown RBP17.41■□□□□ 0.38
CPSF1-207ENST00000531727 SIN3BO75182 1162 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 SRPRAP08240 638 aaKnown RBP17.41■□□□□ 0.38
CPSF1-207ENST00000531727 ZNF883P0CG24 379 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 TACR2P21452 398 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 MATKP42679 507 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 AFF3P51826 1226 aaKnown RBP17.41■□□□□ 0.38
CPSF1-207ENST00000531727 APBA1Q02410 837 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 EIF4EBP2Q13542 120 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-207ENST00000531727 TAF5Q15542 800 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 HNRNPA1L2Q32P51 320 aaKnown RBP17.41■□□□□ 0.38
CPSF1-207ENST00000531727 PITRM1Q5JRX3 1037 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 RAP1GAP2Q684P5 730 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 MMS22LQ6ZRQ5 1243 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 CHSY1Q86X52 802 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 IRF2BP1Q8IU81 584 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 ATP6V0D2Q8N8Y2 350 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 SHC3Q92529 594 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 BIRC7Q96CA5 298 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 GAREM1Q9H706 876 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 OSGEPQ9NPF4 335 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 KIAA1522Q9P206 1035 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-207ENST00000531727 ZMIZ1Q9ULJ6 1067 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 ERVW-1Q9UQF0 538 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 SLCO1B1Q9Y6L6 691 aa17.41■□□□□ 0.38
CPSF1-207ENST00000531727 NYNRINQ9P2P1 1898 aaKnown RBP17.41■□□□□ 0.38
CPSF1-207ENST00000531727 CEP295Q9C0D2 2601 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 A0A1B0GVT2 93 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 RNASEH1O60930 286 aaKnown RBP17.4■□□□□ 0.38
CPSF1-207ENST00000531727 MOCS3O95396 460 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 GLI1P08151 1106 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 CSNK1EP49674 416 aaKnown RBP17.4■□□□□ 0.38
CPSF1-207ENST00000531727 PITX1P78337 314 aaPredicted RBP17.4■□□□□ 0.38
CPSF1-207ENST00000531727 EXOC3L4Q17RC7 722 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 HLA-BQ31612 363 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 SMYD5Q6GMV2 418 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 USP30Q70CQ3 517 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 RAB44Q7Z6P3 723 aaPredicted RBP17.4■□□□□ 0.38
CPSF1-207ENST00000531727 DHX40Q8IX18 779 aaKnown RBP17.4■□□□□ 0.38
CPSF1-207ENST00000531727 CHCHD4Q8N4Q1 142 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 WDTC1Q8N5D0 677 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 PABPC3Q9H361 631 aaKnown RBP17.4■□□□□ 0.38
CPSF1-207ENST00000531727 TM9SF3Q9HD45 589 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 TM7SF3Q9NS93 570 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.4■□□□□ 0.38
CPSF1-207ENST00000531727 SLC12A6Q9UHW9 1150 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 PCOLCE2Q9UKZ9 415 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 PCDHGC3Q9UN70 934 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 NCKAP1Q9Y2A7 1128 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 FNDC3AQ9Y2H6 1198 aaKnown RBP17.4■□□□□ 0.38
CPSF1-207ENST00000531727 ASPMQ8IZT6 3477 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 ITIH6Q6UXX5 1313 aa17.4■□□□□ 0.38
CPSF1-207ENST00000531727 TARSL2A2RTX5 802 aaKnown RBP17.39■□□□□ 0.37
CPSF1-207ENST00000531727 FAM221BA6H8Z2 402 aa17.39■□□□□ 0.37
CPSF1-207ENST00000531727 KCNU1A8MYU2 1149 aa17.39■□□□□ 0.37
CPSF1-207ENST00000531727 F5H5T6 163 aa17.39■□□□□ 0.37
CPSF1-207ENST00000531727 CBFA2T3O75081 653 aa17.39■□□□□ 0.37
CPSF1-207ENST00000531727 PON1P27169 355 aa17.39■□□□□ 0.37
CPSF1-207ENST00000531727 CTSOP43234 321 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-207ENST00000531727 MTIF2P46199 727 aaKnown RBP17.39■□□□□ 0.37
CPSF1-207ENST00000531727 CDK17Q00537 523 aa17.39■□□□□ 0.37
CPSF1-207ENST00000531727 ECT2LQ008S8 904 aa17.39■□□□□ 0.37
CPSF1-207ENST00000531727 TEAD4Q15561 434 aa17.39■□□□□ 0.37
CPSF1-207ENST00000531727 CST6Q15828 149 aa17.39■□□□□ 0.37
CPSF1-207ENST00000531727 C9orf64Q5T6V5 341 aa17.39■□□□□ 0.37
CPSF1-207ENST00000531727 GLRX5Q86SX6 157 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms