RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 TOR3AQ9H497 397 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 VEZTQ9HBM0 779 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 GALNT9Q9HCQ5 603 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TBC1D29Q9UFV1 150 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 CAMK2AQ9UQM7 478 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 NAALADL1Q9UQQ1 740 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 DRG1Q9Y295 367 aaKnown RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 GDAQ9Y2T3 454 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 PCDHA10Q9Y5I2 948 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 EPN1Q9Y6I3 576 aaPredicted RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 CENPJQ9HC77 1338 aaPredicted RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 LOC105369274A0A096LPK9 316 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 LOC102723532A0A0G2JNH3 316 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 GXYLT2A0PJZ3 443 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 A1L4Q6 167 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 GRID2IPA4D2P6 1211 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 SYNDIG1LA6NDD5 238 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 AGAP5A6NIR3 686 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 LINC00473A8K010 186 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 H3BNC9 293 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 PSMD9O00233 223 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 TNPO2O14787 897 aaKnown RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 PTP4A3O75365 173 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 HEXIM1O94992 359 aaKnown RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 F9P00740 461 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 WEE2P0C1S8 567 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 TGFB3P10600 412 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 ACADMP11310 421 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 TNNT1P13805 278 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 CHN1P15882 459 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 PRKCHP24723 683 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 MCM5P33992 734 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 HOXD13P35453 343 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 MPLP40238 635 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 PCP4P48539 62 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 DGKQP52824 942 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 EIF4A1P60842 406 aaKnown RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 MAP2K1Q02750 393 aaPredicted RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 MTAPQ13126 283 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 MAMLD1Q13495 774 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 TXNRD1Q16881 649 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 AAK1Q2M2I8 961 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 SPECC1Q5M775 1068 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 SNX30Q5VWJ9 437 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 ARMC3Q5W041 872 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 DENND1BQ6P3S1 775 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 KLHL24Q6TFL4 600 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 Q6YL49 198 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 H1FNTQ75WM6 255 aaPredicted RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 PEG10Q86TG7 708 aaKnown RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 RAB11FIP4Q86YS3 637 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 RPAP2Q8IXW5 612 aaPredicted RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 OR4N4Q8N0Y3 316 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 GALNT4Q8N4A0 578 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 PTGR2Q8N8N7 351 aaPredicted RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 LSM14AQ8ND56 463 aaKnown RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 NFKBIDQ8NI38 313 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 ZCCHC10Q8TBK6 192 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 SLC2A12Q8TD20 617 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 XAGE5Q8WWM1 108 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 NEU4Q8WWR8 484 aaPredicted RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 RFKQ969G6 155 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 VPS50Q96JG6 964 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 FAR2Q96K12 515 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 PRR25Q96S07 402 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 MYCBPQ99417 103 aaPredicted RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 DPCDQ9BVM2 203 aaPredicted RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 STN1Q9H668 368 aaKnown RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 IL21RQ9HBE5 538 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 DIAPH3Q9NSV4 1193 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 INTS13Q9NVM9 706 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 TAS2R10Q9NYW0 307 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 RAI14Q9P0K7 980 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 TBC1D14Q9P2M4 693 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 RAB21Q9UL25 225 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 TRPC5Q9UL62 973 aaPredicted RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 NOL7Q9UMY1 257 aaKnown RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 UBE2J1Q9Y385 318 aaPredicted RBP3.59□□□□□ -1.83
CD44-229ENST00000528672 PCDHB2Q9Y5E7 798 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 SYNRGQ9UMZ2 1314 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 KAT6AQ92794 2004 aa3.59□□□□□ -1.83
CD44-229ENST00000528672 RUSC2Q8N2Y8 1516 aa3.59□□□□□ -1.84
CD44-229ENST00000528672 A0A087X1B8 175 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 A0A1W2PRQ8 180 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 WDR27A2RRH5 827 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 MBD3L5A6NJ08 208 aaPredicted RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 GTPBP1O00178 669 aaKnown RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 YY2O15391 372 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 RAMP2O60895 175 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 STARD3NLO95772 234 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 IL6RP08887 468 aaPredicted RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 UBL4AP11441 157 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 ALADP13716 330 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 AKR1B1P15121 316 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 ENGP17813 658 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 MMP8P22894 467 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 PSMA4P25789 261 aaKnown RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 CTGFP29279 349 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 MAPK4P31152 587 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 GRK5P34947 590 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms