RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 FBXO32Q969P5 355 aa21.29■■□□□ 1
VPS28-209ENST00000528142 TOP1MTQ969P6 601 aa21.29■■□□□ 1
VPS28-209ENST00000528142 IGSF21Q96ID5 467 aa21.29■■□□□ 1
VPS28-209ENST00000528142 DHRS4Q9BTZ2 278 aa21.29■■□□□ 1
VPS28-209ENST00000528142 EPN3Q9H201 632 aa21.29■■□□□ 1
VPS28-209ENST00000528142 ACTL7BQ9Y614 415 aa21.29■■□□□ 1
VPS28-209ENST00000528142 COL4A6Q14031 1691 aa21.29■■□□□ 1
VPS28-209ENST00000528142 PLXNA3P51805 1871 aa21.29■■□□□ 1
VPS28-209ENST00000528142 SRGAP2BP0DMP2 458 aa21.29■■□□□ 1
VPS28-209ENST00000528142 PTPN3P26045 913 aa21.29■■□□□ 1
VPS28-209ENST00000528142 GARSP41250 739 aaKnown RBP21.29■■□□□ 1
VPS28-209ENST00000528142 GEMIN4P57678 1058 aaKnown RBP21.29■■□□□ 1
VPS28-209ENST00000528142 CDK16Q00536 496 aa21.29■■□□□ 1
VPS28-209ENST00000528142 NRG1Q02297 640 aaPredicted RBP21.29■■□□□ 1
VPS28-209ENST00000528142 USP41Q3LFD5 358 aa21.29■■□□□ 1
VPS28-209ENST00000528142 DPF3Q92784 378 aa21.29■■□□□ 1
VPS28-209ENST00000528142 LRRC39Q96DD0 335 aa21.29■■□□□ 1
VPS28-209ENST00000528142 CEP41Q9BYV8 373 aa21.29■■□□□ 1
VPS28-209ENST00000528142 EIF2B3Q9NR50 452 aaKnown RBP21.29■■□□□ 1
VPS28-209ENST00000528142 SEPT10Q9P0V9 454 aa21.29■■□□□ 1
VPS28-209ENST00000528142 IGSF9Q9P2J2 1179 aa21.29■■□□□ 1
VPS28-209ENST00000528142 BACE2Q9Y5Z0 518 aa21.29■■□□□ 1
VPS28-209ENST00000528142 MICAL3Q7RTP6 2002 aa21.28■■□□□ 1
VPS28-209ENST00000528142 KCNK1O00180 336 aa21.28■■□□□ 1
VPS28-209ENST00000528142 ATP2A2P16615 1042 aaKnown RBP21.28■■□□□ 1
VPS28-209ENST00000528142 TAF10Q12962 218 aa21.28■■□□□ 1
VPS28-209ENST00000528142 RASIP1Q5U651 963 aa21.28■■□□□ 1
VPS28-209ENST00000528142 ZNF689Q96CS4 500 aaPredicted RBP21.28■■□□□ 1
VPS28-209ENST00000528142 SIGLEC10Q96LC7 697 aa21.28■■□□□ 1
VPS28-209ENST00000528142 PLAC1Q9HBJ0 212 aa21.28■■□□□ 1
VPS28-209ENST00000528142 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.28■■□□□ 11e-6■■□□□ 14.1
VPS28-209ENST00000528142 HS3ST4Q9Y661 456 aa21.28■■□□□ 1
VPS28-209ENST00000528142 ALPK3Q96L96 1907 aa21.28■■□□□ 1
VPS28-209ENST00000528142 ABHD14A-ACY1A0A1B0GW23 586 aa21.27■■□□□ 1
VPS28-209ENST00000528142 WDR27A2RRH5 827 aa21.27■■□□□ 1
VPS28-209ENST00000528142 SPAG6O75602 509 aa21.27■■□□□ 1
VPS28-209ENST00000528142 GRIA1P42261 906 aa21.27■■□□□ 1
VPS28-209ENST00000528142 PSEN1P49768 467 aa21.27■■□□□ 1
VPS28-209ENST00000528142 MLLT6P55198 1093 aaPredicted RBP21.27■■□□□ 1
VPS28-209ENST00000528142 RPL10AP62906 217 aaKnown RBP21.27■■□□□ 1
VPS28-209ENST00000528142 NR1H3Q13133 447 aa21.27■■□□□ 1
VPS28-209ENST00000528142 EFTUD2Q15029 972 aaKnown RBP eCLIP21.27■■□□□ 12e-7■■■■□ 23.3
VPS28-209ENST00000528142 TMED2Q15363 201 aa21.27■■□□□ 1
VPS28-209ENST00000528142 KLHL38Q2WGJ6 581 aa21.27■■□□□ 1
VPS28-209ENST00000528142 RWDD4Q6NW29 188 aaKnown RBP21.27■■□□□ 1
VPS28-209ENST00000528142 BCAS4Q8TDM0 211 aa21.27■■□□□ 1
VPS28-209ENST00000528142 ATXN2LQ8WWM7 1075 aaKnown RBP21.27■■□□□ 1
VPS28-209ENST00000528142 TBC1D31Q96DN5 1066 aa21.27■■□□□ 1
VPS28-209ENST00000528142 C1orf74Q96LT6 269 aa21.27■■□□□ 1
VPS28-209ENST00000528142 XPO6Q96QU8 1125 aaKnown RBP21.27■■□□□ 1
VPS28-209ENST00000528142 XAB2Q9HCS7 855 aaKnown RBP21.27■■□□□ 1
VPS28-209ENST00000528142 ZNF638Q14966 1978 aaKnown RBP21.27■■□□□ 1
VPS28-209ENST00000528142 TCRBV9S1A1TA0A576 114 aa21.27■□□□□ 0.99
VPS28-209ENST00000528142 MTSS1O43312 755 aa21.27■□□□□ 0.99
VPS28-209ENST00000528142 ZDHHC11BP0C7U3 371 aa21.27■□□□□ 0.99
VPS28-209ENST00000528142 SLC2A3P11169 496 aa21.27■□□□□ 0.99
VPS28-209ENST00000528142 SEC24CP53992 1094 aa21.27■□□□□ 0.99
VPS28-209ENST00000528142 PID1Q7Z2X4 250 aa21.27■□□□□ 0.99
VPS28-209ENST00000528142 TRABD2AQ86V40 505 aa21.27■□□□□ 0.99
VPS28-209ENST00000528142 ZSCAN18Q8TBC5 510 aaPredicted RBP21.27■□□□□ 0.99
VPS28-209ENST00000528142 DEPDC1BQ8WUY9 529 aa21.27■□□□□ 0.99
VPS28-209ENST00000528142 TLR8Q9NR97 1041 aaKnown RBP21.27■□□□□ 0.99
VPS28-209ENST00000528142 FGF10O15520 208 aaPredicted RBP21.26■□□□□ 0.99
VPS28-209ENST00000528142 MLNP12872 115 aa21.26■□□□□ 0.99
VPS28-209ENST00000528142 ATF6P18850 670 aa21.26■□□□□ 0.99
VPS28-209ENST00000528142 PSMB4P28070 264 aa21.26■□□□□ 0.99
VPS28-209ENST00000528142 TBX4P57082 545 aa21.26■□□□□ 0.99
VPS28-209ENST00000528142 PSMD5Q16401 504 aa21.26■□□□□ 0.99
VPS28-209ENST00000528142 ADGRD1Q6QNK2 874 aa21.26■□□□□ 0.99
VPS28-209ENST00000528142 C14orf80Q86SX3 495 aa21.26■□□□□ 0.99
VPS28-209ENST00000528142 ARHGAP12Q8IWW6 846 aa21.26■□□□□ 0.99
VPS28-209ENST00000528142 SRRM1Q8IYB3 904 aaKnown RBP21.26■□□□□ 0.99
VPS28-209ENST00000528142 PDCD7Q8N8D1 485 aaKnown RBP21.26■□□□□ 0.99
VPS28-209ENST00000528142 CELF6Q96J87 481 aaKnown RBP21.26■□□□□ 0.99
VPS28-209ENST00000528142 RABEP2Q9H5N1 569 aa21.26■□□□□ 0.99
VPS28-209ENST00000528142 RC3H2Q9HBD1 1191 aaKnown RBP21.26■□□□□ 0.99
VPS28-209ENST00000528142 PPANQ9NQ55 473 aaKnown RBP21.26■□□□□ 0.99
VPS28-209ENST00000528142 OLA1Q9NTK5 396 aaKnown RBP21.26■□□□□ 0.99
VPS28-209ENST00000528142 PSMC3IPQ9P2W1 217 aaPredicted RBP21.26■□□□□ 0.99
VPS28-209ENST00000528142 ZC3H7BQ9UGR2 993 aaKnown RBP21.26■□□□□ 0.99
VPS28-209ENST00000528142 TMEM120BA0PK00 339 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 SLC38A8A6NNN8 435 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 F5H423 210 aaPredicted RBP21.25■□□□□ 0.99
VPS28-209ENST00000528142 TBX18O95935 607 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 MOCS2O96007 188 aaPredicted RBP21.25■□□□□ 0.99
VPS28-209ENST00000528142 C1QAP02745 245 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 BRAFP15056 766 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 RPL17P18621 184 aaKnown RBP21.25■□□□□ 0.99
VPS28-209ENST00000528142 OR1D2P34982 312 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 SARNPP82979 210 aaKnown RBP21.25■□□□□ 0.99
VPS28-209ENST00000528142 ZNF33AQ06730 810 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 EFEMP1Q12805 493 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 PIK3R6Q5UE93 754 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 CYTH2Q99418 400 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 PAFAH2Q99487 392 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 GORASP1Q9BQQ3 440 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 TTLL2Q9BWV7 592 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 CATSPERBQ9H7T0 1116 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 INTS9Q9NV88 658 aaKnown RBP21.25■□□□□ 0.99
VPS28-209ENST00000528142 KLHL8Q9P2G9 620 aaPredicted RBP21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms