RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 CCDC134Q9H6E4 229 aa4.53□□□□□ -1.68
CD44-217ENST00000525348 ARFGAP3Q9NP61 516 aa4.53□□□□□ -1.68
CD44-217ENST00000525348 SLC12A4Q9UP95 1085 aa4.53□□□□□ -1.68
CD44-217ENST00000525348 CNTN6Q9UQ52 1028 aa4.53□□□□□ -1.68
CD44-217ENST00000525348 IGLV5-39A0A0G2JS06 123 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 TMEM272A0A1B0GTI8 110 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 CD8B2A6NJW9 211 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 H3BNX3 289 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 FFAR2O15552 330 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 ALDOAP04075 364 aaKnown RBP4.52□□□□□ -1.69
CD44-217ENST00000525348 POLGP54098 1239 aaPredicted RBP4.52□□□□□ -1.69
CD44-217ENST00000525348 PNLIPRP1P54315 467 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 SF3A3Q12874 501 aaKnown RBP eCLIP4.52□□□□□ -1.69
CD44-217ENST00000525348 PTK2BQ14289 1009 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 INPP5JQ15735 1006 aaPredicted RBP4.52□□□□□ -1.69
CD44-217ENST00000525348 TRIM60Q495X7 471 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 PIK3CD-AS1Q5SR53 167 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 LIN54Q6MZP7 749 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 MDGA2Q7Z553 956 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 GATAD2AQ86YP4 633 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 DDIASQ8IXT1 998 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 SRFBP1Q8NEF9 429 aaKnown RBP4.52□□□□□ -1.69
CD44-217ENST00000525348 WDR60Q8WVS4 1066 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 SLC25A28Q96A46 364 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 ZNF700Q9H0M5 742 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 EBF3Q9H4W6 596 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 TXNRD2Q9NNW7 524 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 SQORQ9Y6N5 450 aa4.52□□□□□ -1.69
CD44-217ENST00000525348 CYP3A7-CYP3A51PA0A087WV96 503 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 ABHD14A-ACY1A0A1B0GW23 586 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 FAM90A10PA6NDY2 464 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 MYMKA6NI61 221 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 KRTAP29-1A8MX34 341 aaPredicted RBP4.51□□□□□ -1.69
CD44-217ENST00000525348 B4DGG1 531 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 SETSIPP0DME0 302 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 CHRNB1P11230 501 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 CYP3A7P24462 503 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 GRK5P34947 590 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 HTR3AP46098 478 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 PFKFB4Q16877 469 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 RFX8Q6ZV50 586 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 PIM3Q86V86 326 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 SAMD14Q8IZD0 417 aaPredicted RBP4.51□□□□□ -1.69
CD44-217ENST00000525348 ACRBPQ8NEB7 543 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 NSMCE1Q8WV22 266 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 IP6K1Q92551 441 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 CRB3Q9BUF7 120 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 KATNAL1Q9BW62 490 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 FAM234AQ9H0X4 552 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 SPAG4Q9NPE6 437 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 IPO11Q9UI26 975 aaKnown RBP4.51□□□□□ -1.69
CD44-217ENST00000525348 LAMP3Q9UQV4 416 aa4.51□□□□□ -1.69
CD44-217ENST00000525348 LMTK3Q96Q04 1460 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 CXorf65A6NEN9 183 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 PROB1E7EW31 1015 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 INSIG1O15503 277 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 PRPF4O43172 522 aaKnown RBP eCLIP4.5□□□□□ -1.69
CD44-217ENST00000525348 CRYABP02511 175 aaKnown RBP4.5□□□□□ -1.69
CD44-217ENST00000525348 RBM6P78332 1123 aaKnown RBP4.5□□□□□ -1.69
CD44-217ENST00000525348 TNFAIP2Q03169 654 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 DLGAP5Q15398 846 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 MANEAQ5SRI9 462 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 KIAA1324Q6UXG2 1013 aaKnown RBP4.5□□□□□ -1.69
CD44-217ENST00000525348 ZNF517Q6ZMY9 492 aaPredicted RBP4.5□□□□□ -1.69
CD44-217ENST00000525348 C9orf47Q6ZRZ4 202 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 B4GALNT4Q76KP1 1039 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 FAM47BQ8NA70 645 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 ZNF527Q8NB42 609 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 EID2BQ96D98 161 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 NLRP4Q96MN2 994 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 WDR83Q9BRX9 315 aaKnown RBP4.5□□□□□ -1.69
CD44-217ENST00000525348 SORBS1Q9BX66 1292 aaKnown RBP4.5□□□□□ -1.69
CD44-217ENST00000525348 SFXN1Q9H9B4 322 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 MLXIPQ9HAP2 919 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 FBXO4Q9UKT5 387 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 NFU1Q9UMS0 254 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 DAPP1Q9UN19 280 aa4.5□□□□□ -1.69
CD44-217ENST00000525348 MAGED2Q9UNF1 606 aaPredicted RBP4.5□□□□□ -1.69
CD44-217ENST00000525348 COPG1Q9Y678 874 aaKnown RBP4.5□□□□□ -1.69
CD44-217ENST00000525348 ZNF335Q9H4Z2 1342 aaPredicted RBP4.49□□□□□ -1.69
CD44-217ENST00000525348 AGAP5A6NIR3 686 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 C3orf70A6NLC5 250 aaPredicted RBP4.49□□□□□ -1.69
CD44-217ENST00000525348 RHODO00212 210 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 SYT5O00445 386 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 PLIN1O60240 522 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 HEXIM1O94992 359 aaKnown RBP4.49□□□□□ -1.69
CD44-217ENST00000525348 ALPLP05186 524 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 CYP21A2P08686 494 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 HOXB2P14652 356 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 SCP2P22307 547 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 NANOS2P60321 138 aaKnown RBP4.49□□□□□ -1.69
CD44-217ENST00000525348 RNASELQ05823 741 aaKnown RBP4.49□□□□□ -1.69
CD44-217ENST00000525348 PRTGQ2VWP7 1150 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 ZACNQ401N2 412 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 C6orf10Q5SRN2 563 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 ISM2Q6H9L7 571 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 LRIG3Q6UXM1 1119 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 GPSM1Q86YR5 675 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 ATG16L2Q8NAA4 619 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 ADPRHL1Q8NDY3 354 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms