RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 CBX8Q9HC52 389 aa11.89□□□□□ -0.51
VCAN-212ENST00000515397 RTN4Q9NQC3 1192 aaKnown RBP11.89□□□□□ -0.51
VCAN-212ENST00000515397 FSCN3Q9NQT6 498 aa11.89□□□□□ -0.51
VCAN-212ENST00000515397 TMEM74BQ9NUR3 256 aa11.89□□□□□ -0.51
VCAN-212ENST00000515397 VANGL2Q9ULK5 521 aa11.89□□□□□ -0.51
VCAN-212ENST00000515397 ATXN2Q99700 1313 aaKnown RBP11.88□□□□□ -0.51
VCAN-212ENST00000515397 RALGAPA1Q6GYQ0 2036 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 CNOT1A5YKK6 2376 aaKnown RBP11.88□□□□□ -0.51
VCAN-212ENST00000515397 IGHV1OR15-9A0A0B4J2B8 117 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 BCLAF3A2AJT9 711 aaKnown RBP11.88□□□□□ -0.51
VCAN-212ENST00000515397 F5H5T6 163 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 TIMM44O43615 452 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 PAGE1O75459 146 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 LSM8O95777 96 aaKnown RBP11.88□□□□□ -0.51
VCAN-212ENST00000515397 CAVIN2O95810 425 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 PDGFRAP16234 1089 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 ITPKAP23677 461 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 MZF1P28698 734 aaPredicted RBP11.88□□□□□ -0.51
VCAN-212ENST00000515397 ZNF445P59923 1031 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 ATP11AP98196 1134 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 RPL6Q02878 288 aaKnown RBP11.88□□□□□ -0.51
VCAN-212ENST00000515397 DEUP1Q05D60 604 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 CDH18Q13634 790 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 ENPP2Q13822 863 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 AUHQ13825 339 aaKnown RBP11.88□□□□□ -0.51
VCAN-212ENST00000515397 STARD3Q14849 445 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 KLHL40Q2TBA0 621 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 AASDHQ4L235 1098 aaPredicted RBP11.88□□□□□ -0.51
VCAN-212ENST00000515397 MPP7Q5T2T1 576 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 RNF43Q68DV7 783 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 LPCAT2Q7L5N7 544 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 KIAA0907Q7Z7F0 614 aaPredicted RBP11.88□□□□□ -0.51
VCAN-212ENST00000515397 FAM124AQ86V42 546 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.88□□□□□ -0.51
VCAN-212ENST00000515397 OR52K2Q8NGK3 314 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 JOSD2Q8TAC2 188 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 WFIKKN2Q8TEU8 576 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 LOXL4Q96JB6 756 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 SPACA7Q96KW9 195 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 RPL10LQ96L21 214 aaKnown RBP11.88□□□□□ -0.51
VCAN-212ENST00000515397 NPY6RQ99463 290 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 BPIFA3Q9BQP9 254 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 TKTL2Q9H0I9 626 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 WDCPQ9H6R7 721 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 METTL5Q9NRN9 209 aaKnown RBP11.88□□□□□ -0.51
VCAN-212ENST00000515397 SLCO3A1Q9UIG8 710 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 TMEM59LQ9UK28 342 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 THADAQ6YHU6 1953 aa11.88□□□□□ -0.51
VCAN-212ENST00000515397 DCHS1Q96JQ0 3298 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 TYW5A2RUC4 315 aaKnown RBP11.87□□□□□ -0.51
VCAN-212ENST00000515397 TMCO5BA8MYB1 307 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 TTC34A8MYJ7 566 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 CNTN5O94779 1100 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 LUC7L3O95232 432 aaKnown RBP11.87□□□□□ -0.51
VCAN-212ENST00000515397 DLDP09622 509 aaKnown RBP11.87□□□□□ -0.51
VCAN-212ENST00000515397 ZNF806P0C7X5 589 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 MAOBP27338 520 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 STK19P49842 368 aaPredicted RBP11.87□□□□□ -0.51
VCAN-212ENST00000515397 COPAP53621 1224 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 PTP4A2Q12974 167 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 EIF4HQ15056 248 aaKnown RBP11.87□□□□□ -0.51
VCAN-212ENST00000515397 CDO1Q16878 200 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 CLEC16AQ2KHT3 1053 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 C15orf59Q2T9L4 293 aaPredicted RBP11.87□□□□□ -0.51
VCAN-212ENST00000515397 SLC25A52Q3SY17 297 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 PITRM1Q5JRX3 1037 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 PLA2G2CQ5R387 149 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 CYP2U1Q7Z449 544 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 FAM131BQ86XD5 332 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 ZNF677Q86XU0 584 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 ZDHHC17Q8IUH5 632 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 CCDC117Q8IWD4 279 aaPredicted RBP11.87□□□□□ -0.51
VCAN-212ENST00000515397 AHI1Q8N157 1196 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 CCAR2Q8N163 923 aaKnown RBP11.87□□□□□ -0.51
VCAN-212ENST00000515397 GPR161Q8N6U8 529 aaKnown RBP11.87□□□□□ -0.51
VCAN-212ENST00000515397 C12orf50Q8NA57 414 aaPredicted RBP11.87□□□□□ -0.51
VCAN-212ENST00000515397 RXFP2Q8WXD0 754 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 SIPA1Q96FS4 1042 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 RPRD1AQ96P16 312 aaPredicted RBP11.87□□□□□ -0.51
VCAN-212ENST00000515397 AGPAT1Q99943 283 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 TMEM245Q9H330 911 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 PRSS16Q9NQE7 514 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 TAS2R14Q9NYV8 317 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 MPP6Q9NZW5 540 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 NCOR2Q9Y618 2525 aa11.87□□□□□ -0.51
VCAN-212ENST00000515397 SRGAP2O75044 1071 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 SERPINC1P01008 464 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 ATP5BP06576 529 aaKnown RBP11.86□□□□□ -0.51
VCAN-212ENST00000515397 SLC2A3P11169 496 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 UNGP13051 313 aaPredicted RBP11.86□□□□□ -0.51
VCAN-212ENST00000515397 KCNA4P22459 653 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 MMP8P22894 467 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 CXCR3P49682 368 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 IRX4P78413 519 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 LMNB2Q03252 620 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 CCDC14Q49A88 953 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 ALFQ53S48 1182 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 E4F1Q66K89 784 aaPredicted RBP11.86□□□□□ -0.51
VCAN-212ENST00000515397 IRF2BP2Q7Z5L9 587 aa11.86□□□□□ -0.51
VCAN-212ENST00000515397 SLC41A1Q8IVJ1 513 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms