RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 BSPRYQ5W0U4 402 aa21.12■□□□□ 0.97
SQSTM1-215ENST00000514093 FOXD4L3Q6VB84 417 aaPredicted RBP21.12■□□□□ 0.97
SQSTM1-215ENST00000514093 CCDC150Q8NCX0 1101 aa21.12■□□□□ 0.97
SQSTM1-215ENST00000514093 TATDN2Q93075 761 aa21.12■□□□□ 0.97
SQSTM1-215ENST00000514093 LMLNQ96KR4 655 aa21.12■□□□□ 0.97
SQSTM1-215ENST00000514093 ZNF396Q96N95 335 aaPredicted RBP21.12■□□□□ 0.97
SQSTM1-215ENST00000514093 LGMNQ99538 433 aa21.12■□□□□ 0.97
SQSTM1-215ENST00000514093 LRRC4Q9HBW1 653 aa21.12■□□□□ 0.97
SQSTM1-215ENST00000514093 CISHQ9NSE2 258 aa21.12■□□□□ 0.97
SQSTM1-215ENST00000514093 SERTAD1Q9UHV2 236 aa21.12■□□□□ 0.97
SQSTM1-215ENST00000514093 MAST4O15021 2626 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 ATMQ13315 3056 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 YJEFN3A6XGL0 299 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 TTC34A8MYJ7 566 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 E7ENQ6 273 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 CSKP41240 450 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 SLC8A3P57103 927 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 ADIGQ0VDE8 80 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 GOLGA7BQ2TAP0 167 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 C9orf64Q5T6V5 341 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 SFMBT2Q5VUG0 894 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 FOXD4L5Q5VV16 416 aaPredicted RBP21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 ARHGAP17Q68EM7 881 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 KDM7AQ6ZMT4 941 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 SPATS2Q86XZ4 545 aaKnown RBP21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 MFN1Q8IWA4 741 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 AADATQ8N5Z0 425 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 OR14C36Q8NHC7 312 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 FOXD4L4Q8WXT5 416 aaPredicted RBP21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 SEMA4DQ92854 862 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 TTC17Q96AE7 1141 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 MRGPRX3Q96LB0 322 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 IPO9Q96P70 1041 aaKnown RBP21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 ADAMTS1Q9UHI8 967 aa21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 INTS6Q9UL03 887 aaKnown RBP21.11■□□□□ 0.97
SQSTM1-215ENST00000514093 CALUO43852 315 aaPredicted RBP21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 SDC3O75056 442 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 YEATS4O95619 227 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 LATS1O95835 1130 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 CTSOP43234 321 aaPredicted RBP21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 PSMD8P48556 350 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 CCR5P51681 352 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 PPP2CBP62714 309 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 PPP2CAP67775 309 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 SFSWAPQ12872 951 aaKnown RBP21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 ILKQ13418 452 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 MMS22LQ6ZRQ5 1243 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 KANSL1Q7Z3B3 1105 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 MYEOVQ96EZ4 313 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 CPNE5Q9HCH3 593 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 FAM13BQ9NYF5 915 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 PCDHB1Q9Y5F3 818 aa21.1■□□□□ 0.97
SQSTM1-215ENST00000514093 C10orf142B7Z368 130 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 ERVH48-1M5A8F1 160 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 RXRGP48443 463 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 FAM133BQ5BKY9 247 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 CEP57L1Q8IYX8 460 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 DCBLD1Q8N8Z6 715 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 UBA3Q8TBC4 463 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 RFFLQ8WZ73 363 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 PAGE5Q96GU1 130 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 FAM129BQ96TA1 746 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 SEMA4CQ9C0C4 833 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 TSPAN16Q9UKR8 245 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 FZD4Q9ULV1 537 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 PCDHA7Q9UN72 937 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 ERVW-1Q9UQF0 538 aa21.09■□□□□ 0.97
SQSTM1-215ENST00000514093 TBC1D3DA0A087WVF3 549 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 TBC1D3IA0A087WXS9 549 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 TBC1D3EA0A087X179 549 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 TBC1D3KA0A087X1G2 549 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 TBC1D3FA6NER0 549 aaPredicted RBP21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 TBC1D3LB9A6J9 549 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 XPO1O14980 1071 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 MT-CO3P00414 261 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 TBC1D3HP0C7X1 549 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 KRT13P13646 458 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 NR2F2P24468 414 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 NUMBP49757 651 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 ADPRHP54922 357 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 SLC45A4Q5BKX6 768 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 FSCBQ5H9T9 825 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 MPP7Q5T2T1 576 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 ARHGAP40Q5TG30 622 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 TBC1D3GQ6DHY5 549 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 NADSYN1Q6IA69 706 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 TBC1D3CQ6IPX1 549 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 INTS8Q75QN2 995 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 SND1Q7KZF4 910 aaKnown RBP eCLIP21.08■□□□□ 0.973e-8■□□□□ 8.1
SQSTM1-215ENST00000514093 FAM186BQ8IYM0 893 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 TBC1D3Q8IZP1 549 aaPredicted RBP21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 CARNMT1Q8N4J0 409 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 FIBINQ8TAL6 211 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 ERVMER34-1Q9H9K5 563 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 TMEM8AQ9HCN3 771 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 ABCC13Q9NSE7 274 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 SLCO3A1Q9UIG8 710 aa21.08■□□□□ 0.97
SQSTM1-215ENST00000514093 ARID1BQ8NFD5 2236 aaPredicted RBP21.07■□□□□ 0.96
SQSTM1-215ENST00000514093 PIK3R2O00459 728 aa21.07■□□□□ 0.96
SQSTM1-215ENST00000514093 TRIM38O00635 465 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms