RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SH3BP1Q9Y3L3 701 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 PCDHA10Q9Y5I2 948 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 NRXN3Q9Y4C0 1643 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 AKAP12Q02952 1782 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 A0A0X1KG70 313 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 POLRMTO00411 1230 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 KPNA5O15131 536 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 NCAM2O15394 837 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 TRIM32Q13049 653 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 SWI5Q1ZZU3 235 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 GPR107Q5VW38 600 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 OLFML2AQ68BL7 652 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 ATG9AQ7Z3C6 839 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 CAMK1DQ8IU85 385 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 CLEC10AQ8IUN9 316 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 FBXO36Q8NEA4 188 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 DLG3Q92796 817 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 HAVCR1Q96D42 359 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 GPATCH1Q9BRR8 931 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 COPS7BQ9H9Q2 264 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 GPN3Q9UHW5 284 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 AGAP1Q9UPQ3 857 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 SLC9A8Q9Y2E8 581 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 SNX9Q9Y5X1 595 aa8.91□□□□□ -0.98
LIMCH1-218ENST00000513024 CYP27B1O15528 508 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 FAM153BP0C7A2 387 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 DBTP11182 482 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 ADSSP30520 456 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 CDK17Q00537 523 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 FAM153CQ494X1 144 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 ASAP3Q8TDY4 903 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 FAM151AQ8WW52 585 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 MROH8Q9H579 483 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 DUSP12Q9UNI6 340 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 DNAJC16Q9Y2G8 782 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 SUPT3HB4E1H0 165 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 H7C4K7 107 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 KPNA3O00505 521 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 RPS6KA5O75582 802 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 BGNP21810 368 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 ITGA3P26006 1051 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 SULT1E1P49888 294 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 PGDP52209 483 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 HK2P52789 917 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 NME5P56597 212 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 IL18R1Q13478 541 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 BLMHQ13867 455 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 FAM98BQ52LJ0 330 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 C1orf189Q5VU69 101 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 TRIM65Q6PJ69 517 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 PACS1Q6VY07 963 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 NCCRP1Q6ZVX7 275 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 PEG10Q86TG7 708 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 RBM12BQ8IXT5 1001 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 CENPLQ8N0S6 344 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 CAMKK1Q8N5S9 505 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 UTP15Q8TED0 518 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 PABPC5Q96DU9 382 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 TUBGCP5Q96RT8 1024 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 LRMDAQ9H2I8 198 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 RSAD1Q9HA92 442 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 OSGEPQ9NPF4 335 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 GTF2A1LQ9UNN4 478 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 RPL26L1Q9UNX3 145 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 SAGE2PA6NJ88 616 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 PRPF4O43172 522 aaKnown RBP eCLIP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 PARNO95453 639 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 NPTXRO95502 500 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 NADKO95544 446 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 APOC1P02654 83 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 ITGA4P13612 1032 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 ME2P23368 584 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 RFX5P48382 616 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 RPS7P62081 194 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 RNF220Q5VTB9 566 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 DENND1BQ6P3S1 775 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 FRMD7Q6ZUT3 714 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 SNX32Q86XE0 403 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 EID3Q8N140 333 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 SCFD2Q8WU76 684 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 CAVIN3Q969G5 261 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 TMEM143Q96AN5 459 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 AIFM2Q9BRQ8 373 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 SLC38A7Q9NVC3 462 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 PHF11Q9UIL8 331 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 GTF3C4Q9UKN8 822 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 RAB21Q9UL25 225 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 PNPLA7Q6ZV29 1317 aa8.9□□□□□ -0.98
LIMCH1-218ENST00000513024 I3L521 148 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 PLSCR1O15162 318 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 PSIP1O75475 530 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 NDUFS3O75489 264 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 PRKD3O94806 890 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 CBX6O95503 412 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 PRKACAP17612 351 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 PSME3P61289 254 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 FOXO4P98177 505 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 VAC14Q08AM6 782 aa8.9□□□□□ -0.99
LIMCH1-218ENST00000513024 ACCSLQ4AC99 568 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms