RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 PABPC1P11940 636 aaKnown RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 CYP3A5P20815 502 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 CCNG1P51959 295 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 AIF1P55008 147 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 TLE2Q04725 743 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 ORC1Q13415 861 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 PTPN21Q16825 1174 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 RAP1GAP2Q684P5 730 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 FBXO46Q6PJ61 603 aaPredicted RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 LRIG3Q6UXM1 1119 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 LPCAT2Q7L5N7 544 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 ST13P4Q8IZP2 240 aaPredicted RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 CYP4X1Q8N118 509 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 CYP4Z2PQ8N1L4 340 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 REXO5Q96IC2 774 aaKnown RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 TMEM175Q9BSA9 504 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 ADI1Q9BV57 179 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 PHACTR1Q9C0D0 580 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 CCDC90BQ9GZT6 254 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 PABPC3Q9H361 631 aaKnown RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 PCDHA3Q9Y5H8 950 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 MORC2Q9Y6X9 1032 aaPredicted RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 FOXN1O15353 648 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 IL2P60568 153 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 RPP38P78345 283 aaKnown RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 BNC1Q01954 994 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 MGAT5Q09328 741 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 ZBTB17Q13105 803 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 NAB1Q13506 487 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 SPANXN3Q5MJ09 141 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 OLFML2BQ68BL8 750 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 TPGS2Q68CL5 300 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 SCARA3Q6AZY7 606 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 ZFPM1Q8IX07 1006 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 SUN3Q8TAQ9 357 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 ZNF606Q8WXB4 792 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 TGS1Q96RS0 853 aaKnown RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 IL12RB2Q99665 862 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 FAM126AQ9BYI3 521 aaPredicted RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 CDT1Q9H211 546 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 FAM124BQ9H5Z6 455 aaPredicted RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 CREBZFQ9NS37 354 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 DUS2Q9NX74 493 aaKnown RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 WARS2Q9UGM6 360 aaKnown RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 ZNHIT2Q9UHR6 403 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 GNPTGQ9UJJ9 305 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 PADI3Q9ULW8 664 aa4.34□□□□□ -1.71
VCAN-209ENST00000513016 TNPO3Q9Y5L0 923 aaKnown RBP4.34□□□□□ -1.71
VCAN-209ENST00000513016 RHPN2P1A8MT19 583 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 NUDT14O95848 222 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 EIF2S1P05198 315 aaKnown RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 TKTP29401 623 aaKnown RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 ACLYP53396 1101 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 CASP7P55210 303 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 MRPS15P82914 257 aaKnown RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 SLC20A2Q08357 652 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 MPP3Q13368 585 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 BOP1Q14137 746 aaKnown RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 TARBP2Q15633 366 aaKnown RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 FAM133BQ5BKY9 247 aaKnown RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 FIGNQ5HY92 759 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 TREML2Q5T2D2 321 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 TRIM68Q6AZZ1 485 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 PAGE2Q7Z2X7 111 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 KIAA0319LQ8IZA0 1049 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 CCDC185Q8N715 623 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 TTC29Q8NA56 475 aaPredicted RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 ANKRD52Q8NB46 1076 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 TSTD1Q8NFU3 115 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 MYCBPAPQ8TBZ2 947 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 METTL21AQ8WXB1 218 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 TUBGCP3Q96CW5 907 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 ACO2Q99798 780 aaKnown RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 CNGB3Q9NQW8 809 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 KBTBD4Q9NVX7 518 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 GPATCH2LQ9NWQ4 482 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 SCN3BQ9NY72 215 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 CFAP97Q9P2B7 532 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 CHORDC1Q9UHD1 332 aaPredicted RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 AMACRQ9UHK6 382 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 VANGL2Q9ULK5 521 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 PCDHA11Q9Y5I1 949 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 PER2O15055 1255 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 CCL16O15467 120 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 TLR5O60602 858 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 CLDN11O75508 207 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 KRT33AO76009 404 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 GLRA2P23416 452 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 FSHRP23945 695 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 GRK2P25098 689 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 IFNGR2P38484 337 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 ALDH6A1Q02252 535 aaKnown RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 CSTF3Q12996 717 aaKnown RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 CRHR2Q13324 411 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 EPC2Q52LR7 807 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 PDPK2PQ6A1A2 396 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 JAMLQ86YT9 394 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 DENND1CQ8IV53 801 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 KREMEN2Q8NCW0 462 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 ZSWIM1Q9BR11 485 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms