RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 PRPF39Q86UA1 669 aaKnown RBP12.05□□□□□ -0.48
RNF4-216ENST00000511859 C12orf56Q8IXR9 622 aa12.05□□□□□ -0.48
RNF4-216ENST00000511859 ZC3H3Q8IXZ2 948 aaKnown RBP12.05□□□□□ -0.48
RNF4-216ENST00000511859 KDM1BQ8NB78 822 aa12.05□□□□□ -0.48
RNF4-216ENST00000511859 PARD3BQ8TEW8 1205 aa12.05□□□□□ -0.48
RNF4-216ENST00000511859 GRAMD1AQ96CP6 724 aa12.05□□□□□ -0.48
RNF4-216ENST00000511859 TMX3Q96JJ7 454 aa12.05□□□□□ -0.48
RNF4-216ENST00000511859 NT5C1AQ9BXI3 368 aa12.05□□□□□ -0.48
RNF4-216ENST00000511859 UBXN6Q9BZV1 441 aa12.05□□□□□ -0.48
RNF4-216ENST00000511859 SERGEFQ9UGK8 458 aa12.05□□□□□ -0.48
RNF4-216ENST00000511859 HMGXB4Q9UGU5 601 aa12.05□□□□□ -0.48
RNF4-216ENST00000511859 NBASA2RRP1 2371 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 TBC1D3DA0A087WVF3 549 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 TBC1D3IA0A087WXS9 549 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 TBC1D3EA0A087X179 549 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 TBC1D3KA0A087X1G2 549 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 TBC1D3FA6NER0 549 aaPredicted RBP12.04□□□□□ -0.48
RNF4-216ENST00000511859 TBC1D3LB9A6J9 549 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 SIN3BO75182 1162 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 CSO75390 466 aaKnown RBP12.04□□□□□ -0.48
RNF4-216ENST00000511859 KIF20AO95235 890 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 VNN1O95497 513 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 LATS1O95835 1130 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 ASLP04424 464 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 TBC1D3HP0C7X1 549 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 CKMT1AP12532 417 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 RBMS1P29558 406 aaKnown RBP12.04□□□□□ -0.48
RNF4-216ENST00000511859 SKOR1P84550 965 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 STAT4Q14765 748 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 ARL13BQ3SXY8 428 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 TBC1D3GQ6DHY5 549 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 TBC1D3CQ6IPX1 549 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 MMAAQ8IVH4 418 aaKnown RBP12.04□□□□□ -0.48
RNF4-216ENST00000511859 TBC1D3Q8IZP1 549 aaPredicted RBP12.04□□□□□ -0.48
RNF4-216ENST00000511859 SLC25A45Q8N413 288 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 OR4C6Q8NH72 309 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 OR14C36Q8NHC7 312 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 HPS3Q969F9 1004 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 TTC17Q96AE7 1141 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 MYO19Q96H55 970 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 SLC46A1Q96NT5 459 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 PANK2Q9BZ23 570 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 ABCG4Q9H172 646 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 KDM4CQ9H3R0 1056 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 IGSF5Q9NSI5 407 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 OLA1Q9NTK5 396 aaKnown RBP12.04□□□□□ -0.48
RNF4-216ENST00000511859 FBXO2Q9UK22 296 aaPredicted RBP12.04□□□□□ -0.48
RNF4-216ENST00000511859 DMTF1Q9Y222 760 aa12.04□□□□□ -0.48
RNF4-216ENST00000511859 HBS1LQ9Y450 684 aaKnown RBP12.04□□□□□ -0.48
RNF4-216ENST00000511859 MYO9AB2RTY4 2548 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 UBE4BO95155 1302 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 RELNP78509 3460 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 LRRIQ3A6PVS8 624 aaPredicted RBP12.03□□□□□ -0.48
RNF4-216ENST00000511859 LZTS3O60299 673 aaPredicted RBP12.03□□□□□ -0.48
RNF4-216ENST00000511859 EXOC3O60645 756 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 ADH1BP00325 375 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 C5AR1P21730 350 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 CASP4P49662 377 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 ADPRHP54922 357 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 INHBCP55103 352 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 YWHAGP61981 247 aaKnown RBP eCLIP12.03□□□□□ -0.48
RNF4-216ENST00000511859 EHHADHQ08426 723 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 INCA1Q0VD86 236 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 KMT5BQ4FZB7 885 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 C9orf64Q5T6V5 341 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 HSCBQ8IWL3 235 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 ELMO3Q96BJ8 720 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 CLIC6Q96NY7 704 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 TRIM4Q9C037 500 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 TNMDQ9H2S6 317 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 MTG2Q9H4K7 406 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 USP29Q9HBJ7 922 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 FOXD4L1Q9NU39 408 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 EVA1BQ9NVM1 165 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 ARHGAP20Q9P2F6 1191 aa12.03□□□□□ -0.48
RNF4-216ENST00000511859 TFIP11Q9UBB9 837 aaKnown RBP12.03□□□□□ -0.48
RNF4-216ENST00000511859 RP1P56715 2156 aa12.02□□□□□ -0.48
RNF4-216ENST00000511859 CREBBPQ92793 2442 aa12.02□□□□□ -0.48
RNF4-216ENST00000511859 ABCB7O75027 752 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 SDC3O75056 442 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 ASS1P00966 412 aaKnown RBP12.02□□□□□ -0.49
RNF4-216ENST00000511859 SFTPCP11686 197 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 KRT10P13645 584 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 DGKAP23743 735 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 CD70P32970 193 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 ASPAP45381 313 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 DUSP3P51452 185 aaPredicted RBP12.02□□□□□ -0.49
RNF4-216ENST00000511859 AMPD3Q01432 767 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 ZACNQ401N2 412 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 PPP1R26Q5T8A7 1209 aaPredicted RBP12.02□□□□□ -0.49
RNF4-216ENST00000511859 EXD3Q8N9H8 876 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 FIBINQ8TAL6 211 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 PLEKHO2Q8TD55 490 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 CYP3A43Q9HB55 503 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 STARD5Q9NSY2 213 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 ANKMY1Q9P2S6 941 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 TJP2Q9UDY2 1190 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 SATB2Q9UPW6 733 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 PCDHGA8Q9Y5G5 932 aa12.02□□□□□ -0.49
RNF4-216ENST00000511859 CLIC4Q9Y696 253 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms