RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ULK4Q96C45 1275 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 CLCC1Q96S66 551 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 CDRT15Q96T59 188 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 TMED9Q9BVK6 235 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 OXCT2Q9BYC2 517 aaPredicted RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 ACTR6Q9GZN1 396 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ZSWIM6Q9HCJ5 1215 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 GINM1Q9NU53 330 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ARHGEF38Q9NXL2 777 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 TMEM216Q9P0N5 145 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 SRP68Q9UHB9 627 aaKnown RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 SSR3Q9UNL2 185 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 SHOC2Q9UQ13 582 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 EIF3LQ9Y262 564 aaKnown RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 USTQ9Y2C2 406 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 MAN2B2Q9Y2E5 1009 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ZMYM6O95789 1325 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 RHPN2P1A8MT19 583 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 MINDY4BA8MYZ0 360 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 MYO1GB0I1T2 1018 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 C9IYK1 514 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 DFFAO00273 331 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 SEC24DO94855 1032 aaPredicted RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 NADKO95544 446 aaPredicted RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 FGGP02679 453 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 NR3C2P08235 984 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 TSPAN19P0C672 248 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 RARGP13631 454 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ANPEPP15144 967 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 CHKAP35790 457 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 RPP38P78345 283 aaKnown RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 SREBF2Q12772 1141 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 FOXD4Q12950 439 aaPredicted RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 TRIM32Q13049 653 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 NOGQ13253 232 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 MSLNQ13421 630 aaPredicted RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 GIT2Q14161 759 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 KRT31Q15323 416 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 STILQ15468 1287 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 MAPK6Q16659 721 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 CA9Q16790 459 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ME3Q16798 604 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 FBXO43Q4G163 708 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 MSANTD2Q6P1R3 559 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 DNAJC24Q6P3W2 148 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 PAMR1Q6UXH9 720 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ZNF605Q86T29 641 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 CAND1Q86VP6 1230 aaKnown RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 KATNAL2Q8IYT4 538 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 WDSUB1Q8N9V3 476 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 PHC3Q8NDX5 983 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 TPCN2Q8NHX9 752 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 DNAJA4Q8WW22 397 aaPredicted RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 IPCEF1Q8WWN9 437 aaPredicted RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 CRELD1Q96HD1 420 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 GMCL1Q96IK5 515 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 CLPTM1LQ96KA5 538 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 AIFM3Q96NN9 605 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 C7orf50Q9BRJ6 194 aaKnown RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 PELOQ9BRX2 385 aaKnown RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 NUSAP1Q9BXS6 441 aaKnown RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 PRDM6Q9NQX0 595 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 FAM207AQ9NSI2 230 aaPredicted RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 DDX18Q9NVP1 670 aaKnown RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 TRNAU1APQ9NX07 287 aaKnown RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 TMEM161AQ9NX61 479 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 TAS2R7Q9NYW3 318 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 VPS54Q9P1Q0 977 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 TNFRSF10DQ9UBN6 386 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 FBXO40Q9UH90 709 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 HACL1Q9UJ83 578 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 HAO1Q9UJM8 370 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 CPSF3Q9UKF6 684 aaKnown RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 TBC1D30Q9Y2I9 924 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 TRPV2Q9Y5S1 764 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 AKAP12Q02952 1782 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 SPATA31E1Q6ZUB1 1445 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 LOC100653049A0A140TA62 436 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 RRN3P2A6NIE6 340 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 OPLAHO14841 1288 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 SLC27A2O14975 620 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 KPNA6O60684 536 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 UNC5CO95185 931 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 IGHDP01880 384 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ZDHHC11BP0C7U3 371 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 CPEP16870 476 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ITGA2P17301 1181 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 MYL9P24844 172 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ECHS1P30084 290 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 WEE1P30291 646 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 NMT1P30419 496 aaKnown RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 CDC42P60953 191 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 VLDLRP98155 873 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 PTPN21Q16825 1174 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 TSHZ3Q63HK5 1081 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 UGT3A1Q6NUS8 523 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 BHLHB9Q6PI77 547 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 PROSER1Q86XN7 944 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 SLC35F3Q8IY50 421 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms