RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 KRT27Q7Z3Y8 459 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 ADPRHL1Q8NDY3 354 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 RUNDC1Q96C34 613 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 STRBPQ96SI9 672 aaKnown RBP3.24□□□□□ -1.89
NUP54-208ENST00000508604 C1QTNF4Q9BXJ3 329 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 RTFDC1Q9BY42 306 aaPredicted RBP3.24□□□□□ -1.89
NUP54-208ENST00000508604 BRINP2Q9C0B6 783 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 TNFSF13BQ9Y275 285 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 B3GNT3Q9Y2A9 372 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 CADPSQ9ULU8 1353 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 GOLIM4O00461 696 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 SLC16A5O15375 505 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 CBFA2T3O75081 653 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 KRT36O76013 467 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 LCKP06239 509 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 ALADP13716 330 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 CLCN5P51795 746 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 POU5F1BQ06416 359 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 HLFQ16534 295 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 FSCBQ5H9T9 825 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 DCAF12L2Q5VW00 463 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 C9orf57Q5W0N0 161 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 WBP2NLQ6ICG8 309 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 CXorf57Q6NSI4 855 aaKnown RBP3.24□□□□□ -1.89
NUP54-208ENST00000508604 KRT28Q7Z3Y7 464 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 CCDC150Q8NCX0 1101 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 ZNF419Q96HQ0 510 aaPredicted RBP3.24□□□□□ -1.89
NUP54-208ENST00000508604 CDH19Q9H159 772 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 TCF7L2Q9NQB0 619 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 LOC102724159A0A0B4J2E5 919 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 CLEC18AA5D8T8 446 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 ZBTB11O95625 1053 aaPredicted RBP3.23□□□□□ -1.89
NUP54-208ENST00000508604 EEF1A2Q05639 463 aaKnown RBP3.23□□□□□ -1.89
NUP54-208ENST00000508604 KIF5AQ12840 1032 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 GALNT3Q14435 633 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 SLC39A14Q15043 492 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 PWP2Q15269 919 aaKnown RBP3.23□□□□□ -1.89
NUP54-208ENST00000508604 PTPROQ16827 1216 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 MRGPRG-AS1Q2M3A8 158 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 ARHGAP29Q52LW3 1261 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 MRNIPQ6NTE8 343 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 KDELC2Q7Z4H8 507 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 GPSM1Q86YR5 675 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 PAQR4Q8N4S7 273 aaPredicted RBP3.23□□□□□ -1.89
NUP54-208ENST00000508604 CLEC18CQ8NCF0 446 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 GRAMD1AQ96CP6 724 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 IQCDQ96DY2 449 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 ZNF347Q96SE7 839 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 FBXO28Q9NVF7 368 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 ZIM2Q9NZV7 527 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 PCDHB7Q9Y5E2 793 aa3.23□□□□□ -1.89
NUP54-208ENST00000508604 SAC3D1A6NKF1 404 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 SRRM3A6NNA2 597 aaPredicted RBP3.22□□□□□ -1.89
NUP54-208ENST00000508604 VWA5AO00534 786 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 KIF3BO15066 747 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 CNTN5O94779 1100 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 UMODP07911 640 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 ARP10275 920 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 IDEP14735 1019 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 CXCR3P49682 368 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 ZP1P60852 638 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 ABATP80404 500 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 KIAA0753Q2KHM9 967 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 KIF19Q2TAC6 998 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 TDRD12Q587J7 1177 aaKnown RBP3.22□□□□□ -1.89
NUP54-208ENST00000508604 C10orf76Q5T2E6 689 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 USP17L6PQ6QN14 398 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 DSTYKQ6XUX3 929 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 ARMC9Q7Z3E5 817 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 TTC30AQ86WT1 665 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 FAM185AQ8N0U4 392 aa3.22□□□□□ -1.89
NUP54-208ENST00000508604 NOP58Q9Y2X3 529 aaKnown RBP3.22□□□□□ -1.89
NUP54-208ENST00000508604 MS4A18H0YCH9 400 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 MSI1O43347 362 aaKnown RBP3.21□□□□□ -1.9
NUP54-208ENST00000508604 PPP6R2O75170 966 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 LCATP04180 440 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 SLC5A2P31639 672 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 EPHB1P54762 984 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 FAM193AP78312 1265 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 PLCB4Q15147 1175 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 ENTPD8Q5MY95 495 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 RRAGBQ5VZM2 374 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 CRTC1Q6UUV9 634 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 IGFN1Q86VF2 1251 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 OR14A16Q8NHC5 309 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 EPYCQ99645 322 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.21□□□□□ -1.9
NUP54-208ENST00000508604 SFXN1Q9H9B4 322 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 RNF146Q9NTX7 359 aa3.21□□□□□ -1.9
NUP54-208ENST00000508604 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.21□□□□□ -1.9
NUP54-208ENST00000508604 PLEKHB1Q9UF11 243 aaPredicted RBP3.21□□□□□ -1.9
NUP54-208ENST00000508604 LIASO43766 372 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 PPP1R3DO95685 299 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 PEX2P28328 305 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 PDLIM4P50479 330 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 SLC37A1P57057 533 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 CEP85LQ5SZL2 805 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 C8orf82Q6P1X6 216 aaPredicted RBP3.2□□□□□ -1.9
NUP54-208ENST00000508604 WDR93Q6P2C0 686 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.2□□□□□ -1.94e-6■□□□□ 8.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms