RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 SERINC5Q86VE9 423 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 NUDCD3Q8IVD9 361 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 NDUFAF2Q8N183 169 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 PDCD7Q8N8D1 485 aaKnown RBP12.3□□□□□ -0.44
NUP54-202ENST00000502850 SH3TC2Q8TF17 1288 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 HDAC11Q96DB2 347 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 GAD1Q99259 594 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 SMOQ99835 787 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 ACBD6Q9BR61 282 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 LRRC40Q9H9A6 602 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 CSNK1G1Q9HCP0 422 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 CD248Q9HCU0 757 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 WDR6Q9NNW5 1121 aaKnown RBP12.3□□□□□ -0.44
NUP54-202ENST00000502850 SMYD2Q9NRG4 433 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 DDIT4Q9NX09 232 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 COX16Q9P0S2 106 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 SEPT10Q9P0V9 454 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 DCDC2Q9UHG0 476 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 TDRD15B5MCY1 1934 aaKnown RBP12.3□□□□□ -0.44
NUP54-202ENST00000502850 HTTP42858 3142 aa12.3□□□□□ -0.44
NUP54-202ENST00000502850 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 A0A0G2JND7 137 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 MAGEB16A2A368 324 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 WDR27A2RRH5 827 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 ARL5CA6NH57 179 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 BEST1O76090 585 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 AP2A1O95782 977 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 CYP11A1P05108 521 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 ERCC2P18074 760 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 EN2P19622 333 aaPredicted RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 TARSP26639 723 aaKnown RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 PSMB4P28070 264 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 CLCNKBP51801 687 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 FCGRTP55899 365 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 TMPRSS15P98073 1019 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 WASHC5Q12768 1159 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 GRIK3Q13003 919 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 PRPSAP1Q14558 356 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 TBCCQ15814 346 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 SYPL2Q5VXT5 272 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 TRMT10BQ6PF06 316 aaKnown RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 PACS1Q6VY07 963 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 CRLF3Q8IUI8 442 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 ZNF567Q8N184 647 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 MPP5Q8N3R9 675 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 GSTCDQ8NEC7 633 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 CFAP61Q8NHU2 1237 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 PPP1R13LQ8WUF5 828 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 SKA1Q96BD8 255 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 THOC1Q96FV9 657 aaKnown RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 OXNAD1Q96HP4 312 aaPredicted RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 ANKRD27Q96NW4 1050 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 TMEM120AQ9BXJ8 343 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 WWP1Q9H0M0 922 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 STN1Q9H668 368 aaKnown RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 DMAP1Q9NPF5 467 aaPredicted RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 PCMTD2Q9NV79 361 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 NOP53Q9NZM5 478 aaKnown RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 BFARQ9NZS9 450 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 ZFATQ9P243 1243 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 DCTN4Q9UJW0 460 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 STK38LQ9Y2H1 464 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 YJEFN3A6XGL0 299 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 E7ENQ6 273 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 NRP1O14786 923 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 HGSO14964 777 aaPredicted RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 CCDC22O60826 627 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 MYCP01106 439 aaPredicted RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 LMNAP02545 664 aaKnown RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 BPGMP07738 259 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 CYBAP13498 195 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 CALB2P22676 271 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 MGAT1P26572 445 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 GP5P40197 560 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 CXCR3P49682 368 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 NDUFV1P49821 464 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 SESN2P58004 480 aaPredicted RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 MGAT3Q09327 533 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 GALNT2Q10471 571 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 BMPR2Q13873 1038 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 UPP1Q16831 310 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 GRTP1Q5TC63 336 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 MROH9Q5TGP6 573 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 PID1Q7Z2X4 250 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 MTDHQ86UE4 582 aaKnown RBP12.29□□□□□ -0.44
NUP54-202ENST00000502850 RASSF3Q86WH2 238 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 CEP57Q86XR8 500 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 THEM5Q8N1Q8 247 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 ARHGAP24Q8N264 748 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 KIF2BQ8N4N8 673 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 STKLD1Q8NE28 680 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 ARMC2Q8NEN0 867 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 RAET1EQ8TD07 263 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 PTPRN2Q92932 1015 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 CPNE1Q99829 537 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 COLEC11Q9BWP8 271 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 GBA3Q9H227 469 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 WDCPQ9H6R7 721 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 NSMCE4AQ9NXX6 385 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 HAO1Q9UJM8 370 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms