RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MYBP10242 640 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 TDGF1P13385 188 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 CEACAM1P13688 526 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 NR4A1P22736 598 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 HOXC13P31276 330 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 CLRN1P58418 232 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 TFAP4Q01664 338 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 STXBP2Q15833 593 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 LY6KQ17RY6 165 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 BMT2Q1RMZ1 405 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 LETM2Q2VYF4 491 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 UAP1L1Q3KQV9 507 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 SLC44A4Q53GD3 710 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 DAB2IPQ5VWQ8 1189 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 MBNL2Q5VZF2 373 aaKnown RBP4.43□□□□□ -1.7
USP54-217ENST00000498213 RNF219Q5W0B1 726 aaPredicted RBP4.43□□□□□ -1.7
USP54-217ENST00000498213 GPRIN1Q7Z2K8 1008 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 GPR149Q86SP6 731 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 IQCA1Q86XH1 822 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 PQLC1Q8N2U9 271 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 LILRA3Q8N6C8 439 aaPredicted RBP4.43□□□□□ -1.7
USP54-217ENST00000498213 FBXO18Q8NFZ0 1043 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 ATP6V0A1Q93050 837 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 EVI5LQ96CN4 794 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 ZG16BQ96DA0 208 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 MYEOVQ96EZ4 313 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 MYADMQ96S97 322 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 EDEM2Q9BV94 578 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 LANCL2Q9NS86 450 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 TMEM140Q9NV12 185 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 ISY1Q9ULR0 285 aaKnown RBP4.43□□□□□ -1.7
USP54-217ENST00000498213 STX8Q9UNK0 236 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 DMRT1Q9Y5R6 373 aa4.43□□□□□ -1.7
USP54-217ENST00000498213 PARP14Q460N5 1801 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 URB1O60287 2271 aaKnown RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 C17orf102A2RUQ5 167 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 PJA2O43164 708 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 PRKD3O94806 890 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 CXCL14O95715 111 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 OSMP13725 252 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 SMARCA1P28370 1054 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 HOXC8P31273 242 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 PBX3P40426 434 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 SIM1P81133 766 aaPredicted RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 SATB1Q01826 763 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 ARHGAP1Q07960 439 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 MALLQ13021 153 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 IKQ13123 557 aaPredicted RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 BAATQ14032 418 aaPredicted RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 MLF2Q15773 248 aaPredicted RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 ANO4Q32M45 955 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 ASPRV1Q53RT3 343 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 ODR4Q5SWX8 454 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 SYDE2Q5VT97 1194 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 TAF2Q6P1X5 1199 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 RHOUQ7L0Q8 258 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 ZNF572Q7Z3I7 529 aaPredicted RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 VRK3Q8IV63 474 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 DRC7Q8IY82 874 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 MRPL43Q8N983 215 aaKnown RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 COLGALT1Q8NBJ5 622 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 CPEB3Q8NE35 698 aaKnown RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 COG1Q8WTW3 980 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 MRPS27Q92552 414 aaKnown RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 ESR2Q92731 530 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 CDHR1Q96JP9 859 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 SENP7Q9BQF6 1050 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 DDX23Q9BUQ8 820 aaKnown RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 DMRT3Q9NQL9 472 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 CCM2LQ9NUG4 571 aaPredicted RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 TYW1Q9NV66 732 aaKnown RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 STK39Q9UEW8 545 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 NDRG2Q9UN36 371 aaKnown RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 DNM3Q9UQ16 869 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 MRPL11Q9Y3B7 192 aaKnown RBP4.42□□□□□ -1.7
USP54-217ENST00000498213 POLQO75417 2590 aa4.42□□□□□ -1.7
USP54-217ENST00000498213 CACNA1EQ15878 2313 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 DOPEY2Q9Y3R5 2298 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 RELNP78509 3460 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 CENPVL1A0A0U1RR11 272 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 CXorf49A8MYA2 514 aaPredicted RBP4.41□□□□□ -1.7
USP54-217ENST00000498213 HAS3O00219 553 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 CAPN9O14815 690 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 NCAM2O15394 837 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 TEX33O43247 280 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 SLC28A2O43868 658 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 CHRNA1P02708 482 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 HSPD1P10809 573 aaKnown RBP4.41□□□□□ -1.7
USP54-217ENST00000498213 PDHBP11177 359 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 KRT10P13645 584 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 ZSCAN20P17040 1043 aaPredicted RBP4.41□□□□□ -1.7
USP54-217ENST00000498213 CSRP1P21291 193 aaKnown RBP4.41□□□□□ -1.7
USP54-217ENST00000498213 MCCP23508 829 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 DDX6P26196 483 aaKnown RBP eCLIP4.41□□□□□ -1.7
USP54-217ENST00000498213 CALML3P27482 149 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 MPLP40238 635 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 MAGEA9P43362 315 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 AVPR1BP47901 424 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 CHN2P52757 468 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 RPS6P62753 249 aaKnown RBP4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms