RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 JOSD2Q8TAC2 188 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 FBXO32Q969P5 355 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 ULK4Q96C45 1275 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 ZNF333Q96JL9 665 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 SENP8Q96LD8 212 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 CDRT15Q96T59 188 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 CYLDQ9NQC7 956 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 R3HDM2Q9Y2K5 976 aaKnown RBP16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 V9GYQ6 96 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 USP12O75317 370 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 SMIM10L2AP0DMW4 78 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 SMIM10L2BP0DMW5 78 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 TPH1P17752 444 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 GLRBP48167 497 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 SLC1A6P48664 564 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 EIF2B2P49770 351 aaKnown RBP16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 FAM228AQ86W67 206 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 NT5DC4Q86YG4 428 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 DIS3LQ8TF46 1054 aaKnown RBP16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 NCLNQ969V3 563 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 XPNPEP3Q9NQH7 507 aa16.68■□□□□ 0.26
CCDC88B-209ENST00000494080 CCDC189A1A4V9 331 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 GRK2P25098 689 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 NRF1Q16656 503 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 CTXN3Q4LDR2 81 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 N4BP2L1Q5TBK1 243 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 CLEC4FQ8N1N0 589 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 ELMOD1Q8N336 334 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 FAM136AQ96C01 138 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 ULBP1Q9BZM6 244 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 MYH8P13535 1937 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 M0R3G1 203 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 C4BPAP04003 597 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 OCM2P0CE71 109 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 OCMP0CE72 109 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 AVPR1AP37288 418 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 FOXD4Q12950 439 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 UBAP2LQ14157 1087 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 ADCK1Q86TW2 530 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 RBM15BQ8NDT2 890 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 DACT3Q96B18 629 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 PHACTR1Q9C0D0 580 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 MANSC4A6NHS7 340 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 LIASO43766 372 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 SRP72O76094 671 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 FBXO21O94952 628 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 USP17L7P0C7H9 530 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 SCNN1GP51170 649 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 TMCO5AQ8N6Q1 288 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 DHX15O43143 795 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 TBX10O75333 385 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 CPA3P15088 417 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 MMP8P22894 467 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 BDNFP23560 247 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 CCNFP41002 786 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 ALDH7A1P49419 539 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 CDK7P50613 346 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 PKNOX1P55347 436 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 DAB2P98082 770 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 FOLH1Q04609 750 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 DPYSL3Q14195 570 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 PTPN20Q4JDL3 420 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 C16orf46Q6P387 395 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 PCSK9Q8NBP7 692 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 BLOC1S5Q8TDH9 187 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 HTR3CQ8WXA8 447 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 LRRC4CQ9HCJ2 640 aa16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-209ENST00000494080 ZNF536O15090 1300 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 HMOX2P30519 316 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 NXF3Q9H4D5 531 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 TCF7L2Q9NQB0 619 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 RRN3Q9NYV6 651 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 SEPT3Q9UH03 358 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 DCDC2Q9UHG0 476 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 SNCAIPQ9Y6H5 919 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 PRR5-ARHGAP8B1AHC4 643 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 NDUFS3O75489 264 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 ANXA9O76027 345 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 SERPINB10P48595 397 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 WDR4P57081 412 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 ARHGAP8P85298 464 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 NETO2Q8NC67 525 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 USP6NLQ92738 828 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 LRRC40Q9H9A6 602 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 MAFBQ9Y5Q3 323 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 ALS2Q96Q42 1657 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 C1orf232A0A0U1RR37 186 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 TPD52L2O43399 206 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 KRT8P05787 483 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 LINGO3P0C6S8 592 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 SERPINB1P30740 379 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 HARS2P49590 506 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 TFAP2DQ7Z6R9 452 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 PIGZQ86VD9 579 aa16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 ZSCAN18Q8TBC5 510 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 IARS2Q9NSE4 1012 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-209ENST00000494080 UQCRBP14927 111 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 ARL2P36404 184 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 STX5Q13190 355 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms