RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 FAM105AQ9NUU6 356 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 NINJ2Q9NZG7 142 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PADI3Q9ULW8 664 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TAF1LQ8IZX4 1826 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MSI1O43347 362 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 B4GALT4O60513 344 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CILPO75339 1184 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FGFR1P11362 822 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TAP1Q03518 808 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ACAP1Q15027 740 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 INAQ16352 499 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PKN2Q16513 984 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZNF792Q3KQV3 632 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SLC39A12Q504Y0 691 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PDZD4Q76G19 769 aaPredicted RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 NUDCD3Q8IVD9 361 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 B3GALNT2Q8NCR0 500 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 NAT14Q8WUY8 206 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 DDX1Q92499 740 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZNF333Q96JL9 665 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FSD1LQ9BXM9 530 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 KLHL25Q9H0H3 589 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 LRRC4CQ9HCJ2 640 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GID8Q9NWU2 228 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ARMCX1Q9P291 453 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ANKRD31Q8N7Z5 1873 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 LOC100653049A0A140TA62 436 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TRDMT1O14717 391 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 BUD23O43709 281 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 KRT34O76011 436 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 OCM2P0CE71 109 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 OCMP0CE72 109 aaPredicted RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PTPN1P18031 435 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 YWHAZP63104 245 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SP3Q02447 781 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 BST2Q10589 180 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FAM171A1Q5VUB5 890 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 C9orf57Q5W0N0 161 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ECSITQ9BQ95 431 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 DCUN1D5Q9BTE7 237 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 EFHD1Q9BUP0 239 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RNF208Q9H0X6 261 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 AVENQ9NQS1 362 aaPredicted RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SFMBT1Q9UHJ3 866 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 DOLKQ9UPQ8 538 aa11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 URB1O60287 2271 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SIGLEC16A6NMB1 481 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ADCY6O43306 1168 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ESRRBO95718 433 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 LSM8O95777 96 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MYL2P10916 166 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CDK7P50613 346 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ART3Q13508 389 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RASA2Q15283 850 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SLC45A4Q5BKX6 768 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 C10orf120Q5SQS8 335 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZNF572Q7Z3I7 529 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SLFN11Q7Z7L1 901 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ARID3BQ8IVW6 561 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZC3H3Q8IXZ2 948 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZDHHC14Q8IZN3 488 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FAM111AQ96PZ2 611 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PRPF18Q99633 342 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 STRA6Q9BX79 667 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 WARS2Q9UGM6 360 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CYTH4Q9UIA0 394 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RPL26L1Q9UNX3 145 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TRIM43BA6NCK2 446 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ANKRD33BA6NCL7 494 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SOCS7O14512 581 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GPR182O15218 404 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ATG7O95352 703 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 IGFBP6P24592 240 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CCND3P30281 292 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ATXN3P54252 364 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SLC6A3Q01959 620 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PTK7Q13308 1070 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 OASLQ15646 514 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 BOLA3Q53S33 107 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ANKRD22Q5VYY1 191 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PPP1R2P3Q6NXS1 205 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 LPCAT2Q7L5N7 544 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ANKRD23Q86SG2 305 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 XYLT1Q86Y38 959 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TMPRSS6Q8IU80 811 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CDKL2Q92772 493 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SGIP1Q9BQI5 828 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 BLOC1S6Q9UL45 172 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 STARD13Q9Y3M8 1113 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 EVPLQ92817 2033 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RPL22P35268 128 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RPL5P46777 297 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CCR3P51677 355 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PITX1P78337 314 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZNF410Q86VK4 478 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PHF13Q86YI8 300 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ATAD1Q8NBU5 361 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CATSPER1Q8NEC5 780 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 URGCPQ8TCY9 931 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GIPC3Q8TF64 312 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms