RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 COL4A2P08572 1712 aa16.25■□□□□ 0.19
HPS4-216ENST00000493455 H0Y626 953 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 SRFP11831 508 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 KDELR1P24390 212 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 CTNNA2P26232 953 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 CTNNA1P35221 906 aaKnown RBP16.24■□□□□ 0.19
HPS4-216ENST00000493455 ZNF211Q13398 564 aaPredicted RBP16.24■□□□□ 0.19
HPS4-216ENST00000493455 CDH18Q13634 790 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 RPS6KA1Q15418 735 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 DPYSL2Q16555 572 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 ALFQ53S48 1182 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 LRRC38Q5VT99 294 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 RFX6Q8HWS3 928 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 PSTKQ8IV42 348 aaKnown RBP16.24■□□□□ 0.19
HPS4-216ENST00000493455 MFN1Q8IWA4 741 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 MAP7D3Q8IWC1 876 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 CD101Q93033 1021 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 P2RY11Q96G91 374 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 UHRF1Q96T88 793 aaPredicted RBP16.24■□□□□ 0.19
HPS4-216ENST00000493455 ZYG11BQ9C0D3 744 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 CWC15Q9P013 229 aaKnown RBP16.24■□□□□ 0.19
HPS4-216ENST00000493455 FBXL21Q9UKT6 434 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 DUSP12Q9UNI6 340 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 PIAS3Q9Y6X2 628 aa16.24■□□□□ 0.19
HPS4-216ENST00000493455 CCDC66A2RUB6 948 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 MIF4GDA9UHW6 222 aaKnown RBP16.23■□□□□ 0.19
HPS4-216ENST00000493455 ARNTLO00327 626 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 AMPD1P23109 780 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 MSNP26038 577 aaKnown RBP16.23■□□□□ 0.19
HPS4-216ENST00000493455 HOXD9P28356 352 aaPredicted RBP16.23■□□□□ 0.19
HPS4-216ENST00000493455 GJA4P35212 333 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 SLC6A11P48066 632 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 RWDD2BP57060 319 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 PFKPQ01813 784 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 DPYSL3Q14195 570 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 IER5LQ5T953 404 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 MEI1Q5TIA1 1274 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 FYB2Q5VWT5 728 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 KAZNQ674X7 775 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 NAIF1Q69YI7 327 aaPredicted RBP16.23■□□□□ 0.19
HPS4-216ENST00000493455 RFX8Q6ZV50 586 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 C12orf40Q86WS4 652 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 KIAA1958Q8N8K9 716 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 XPO6Q96QU8 1125 aaKnown RBP16.23■□□□□ 0.19
HPS4-216ENST00000493455 DNAJC17Q9NVM6 304 aaKnown RBP16.23■□□□□ 0.19
HPS4-216ENST00000493455 DNAI1Q9UI46 699 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 CLEC4EQ9ULY5 219 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 PCDHA3Q9Y5H8 950 aa16.23■□□□□ 0.19
HPS4-216ENST00000493455 KIAA1549LQ6ZVL6 1849 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.22■□□□□ 0.19
HPS4-216ENST00000493455 A0A1B0GVM2 712 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 TCAF2A6NFQ2 919 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 TRIM24O15164 1050 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 DDX3YO15523 660 aaKnown RBP16.22■□□□□ 0.19
HPS4-216ENST00000493455 LUC7L3O95232 432 aaKnown RBP16.22■□□□□ 0.19
HPS4-216ENST00000493455 DYNLT1P63172 113 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 SEMA3BQ13214 749 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 ZNF177Q13360 481 aaPredicted RBP16.22■□□□□ 0.19
HPS4-216ENST00000493455 PDK2Q15119 407 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 ACBD5Q5T8D3 534 aaPredicted RBP16.22■□□□□ 0.19
HPS4-216ENST00000493455 MANEALQ5VSG8 457 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 TTC39BQ5VTQ0 682 aaPredicted RBP16.22■□□□□ 0.19
HPS4-216ENST00000493455 AADACL2Q6P093 401 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 MFSD7Q6UXD7 560 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 ZNF354CQ86Y25 554 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 KATNAL2Q8IYT4 538 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 ZNF683Q8IZ20 524 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 NETO2Q8NC67 525 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 WFDC5Q8TCV5 224 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.22■□□□□ 0.19
HPS4-216ENST00000493455 ALG3Q92685 438 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 DNASE1L2Q92874 299 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 RBM41Q96IZ5 413 aaKnown RBP16.22■□□□□ 0.19
HPS4-216ENST00000493455 C16orf45Q96MC5 204 aaPredicted RBP16.22■□□□□ 0.19
HPS4-216ENST00000493455 CSPG4P5Q96PW8 444 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 MAK16Q9BXY0 300 aaKnown RBP16.22■□□□□ 0.19
HPS4-216ENST00000493455 CATSPERBQ9H7T0 1116 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 MARK1Q9P0L2 795 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 MFHAS1Q9Y4C4 1052 aa16.22■□□□□ 0.19
HPS4-216ENST00000493455 SPECC1L-ADORA2AF8WAN1 911 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 GFRA2O00451 464 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 KCNK3O14649 394 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 HOXC11O43248 304 aaPredicted RBP16.21■□□□□ 0.19
HPS4-216ENST00000493455 ZRANB2O95218 330 aaKnown RBP eCLIP16.21■□□□□ 0.19
HPS4-216ENST00000493455 PENKP01210 267 aaPredicted RBP16.21■□□□□ 0.19
HPS4-216ENST00000493455 ATP1A1P05023 1023 aaKnown RBP16.21■□□□□ 0.19
HPS4-216ENST00000493455 RHOCP08134 193 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 ERCC2P18074 760 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 OR1E1P30953 314 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 DGKGP49619 791 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 ARSEP51690 589 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 CDH4P55283 916 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 NRG1Q02297 640 aaPredicted RBP16.21■□□□□ 0.19
HPS4-216ENST00000493455 ANKRD20A8PQ5CZ79 823 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 GRAMD4Q6IC98 578 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 SPOCD1Q6ZMY3 1216 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 TPRG1Q6ZUI0 275 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 RCOR2Q8IZ40 523 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 CHFRQ96EP1 664 aa16.21■□□□□ 0.19
HPS4-216ENST00000493455 HES6Q96HZ4 224 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms