RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 VSTM1Q6UX27 236 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 SPATA31D4Q6ZUB0 917 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 TBC1D1Q86TI0 1168 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 GIPC2Q8TF65 315 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 ARHGEF2Q92974 986 aaKnown RBP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 CLP1Q92989 425 aaKnown RBP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 TBC1D31Q96DN5 1066 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 MRRFQ96E11 262 aaKnown RBP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 C8orf48Q96LL4 319 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 OLFM3Q96PB7 478 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 ACTR5Q9H9F9 607 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 DTLQ9NZJ0 730 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 TNRC18O15417 2968 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 TCRBV7S3A2A0A539 114 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 MFSD11O43934 449 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 MAGEA11P43364 429 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 NR2C2P49116 596 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 YWHAGP61981 247 aaKnown RBP eCLIP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 XRCC4Q13426 336 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 PIGWQ7Z7B1 504 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 PPIL6Q8IXY8 311 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 QKIQ96PU8 341 aaKnown RBP eCLIP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 RBM15Q96T37 977 aaKnown RBP eCLIP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 C17orf80Q9BSJ5 609 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 NMUR1Q9HB89 426 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 TRIM33Q9UPN9 1127 aa12.53□□□□□ -0.4
HDAC6-230ENST00000488543 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-230ENST00000488543 CFAP69A5D8W1 941 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 KCNN4O15554 427 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 TMEM63AO94886 807 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 UBOX5O94941 541 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 F9P00740 461 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 SLC45A4Q5BKX6 768 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 PCGF5Q86SE9 256 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 CDKL3Q8IVW4 592 aaPredicted RBP12.52□□□□□ -0.4
HDAC6-230ENST00000488543 KIF2BQ8N4N8 673 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 TAB3Q8N5C8 712 aaPredicted RBP12.52□□□□□ -0.4
HDAC6-230ENST00000488543 CENPTQ96BT3 561 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 OSER1Q9NX31 292 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 SNX10Q9Y5X0 201 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 BACE2Q9Y5Z0 518 aa12.52□□□□□ -0.4
HDAC6-230ENST00000488543 XIRP2A4UGR9 3374 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 NDC80O14777 642 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 DCLK1O15075 740 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 PIAS1O75925 651 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 HAPLN1P10915 354 aaPredicted RBP12.52□□□□□ -0.41
HDAC6-230ENST00000488543 ATF6P18850 670 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 DNAJB1P25685 340 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 MAGEA4P43358 317 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 MTM1Q13496 603 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 SNCBQ16143 134 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 LACTB2Q53H82 288 aaPredicted RBP12.52□□□□□ -0.41
HDAC6-230ENST00000488543 SWT1Q5T5J6 900 aaKnown RBP12.52□□□□□ -0.41
HDAC6-230ENST00000488543 RASIP1Q5U651 963 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 RFX8Q6ZV50 586 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 NUP93Q8N1F7 819 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 CCDC33Q8N5R6 958 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 ZNF461Q8TAF7 563 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 TRIM62Q9BVG3 475 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 SAYSD1Q9NPB0 183 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 IL37Q9NZH6 218 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 SAMD15Q9P1V8 674 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 SCML2Q9UQR0 700 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 TRANK1O15050 2925 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 C5orf42Q9H799 3197 aa12.52□□□□□ -0.41
HDAC6-230ENST00000488543 LINC01553A4QN01 128 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 A8MUI8 341 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 EEF2KO00418 725 aaKnown RBP12.51□□□□□ -0.41
HDAC6-230ENST00000488543 TEX28O15482 410 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 CREB3O43889 395 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 URODP06132 367 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 VAV1P15498 845 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 ERVFC1P60507 584 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 KCNJ2P63252 427 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 ELF3P78545 371 aaPredicted RBP12.51□□□□□ -0.41
HDAC6-230ENST00000488543 KCNJ11Q14654 390 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 FASTKD3Q14CZ7 662 aaKnown RBP12.51□□□□□ -0.41
HDAC6-230ENST00000488543 PAFAH1B3Q15102 231 aaKnown RBP12.51□□□□□ -0.41
HDAC6-230ENST00000488543 NUGGCQ68CJ6 796 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 SRRM1Q8IYB3 904 aaKnown RBP12.51□□□□□ -0.41
HDAC6-230ENST00000488543 PHOSPHO2Q8TCD6 241 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 SPPL2BQ8TCT7 592 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 SP7Q8TDD2 431 aaPredicted RBP12.51□□□□□ -0.41
HDAC6-230ENST00000488543 SGSM3Q96HU1 749 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 HERC2P3Q9BVR0 1158 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 MRPL17Q9NRX2 175 aaKnown RBP12.51□□□□□ -0.41
HDAC6-230ENST00000488543 ABCC13Q9NSE7 274 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 BAIAP2L1Q9UHR4 511 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 MAGED2Q9UNF1 606 aaPredicted RBP12.51□□□□□ -0.41
HDAC6-230ENST00000488543 KIAA1671Q9BY89 1806 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 A0A1W2PQH9 124 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 IRAK2O43187 625 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 BANF1O75531 89 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 ABLIM3O94929 683 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 CTNNB1P35222 781 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 PPM1AP35813 382 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 BMPR1AP36894 532 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 HCAR3P49019 387 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 TNFAIP8L3Q5GJ75 292 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 FNBP1LQ5T0N5 605 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms