RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 BBS2Q9BXC9 721 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 RAB6CQ9H0N0 254 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 DHX35Q9H5Z1 703 aaKnown RBP10.64□□□□□ -0.71
SKA1-204ENST00000488454 C8orf33Q9H7E9 229 aaPredicted RBP10.64□□□□□ -0.71
SKA1-204ENST00000488454 SLC2A4RGQ9NR83 387 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 GTSE1Q9NYZ3 720 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 STIM2Q9P246 746 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 TRIM10Q9UDY6 481 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 OR12D3Q9UGF7 316 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 XPO7Q9UIA9 1087 aaKnown RBP10.64□□□□□ -0.71
SKA1-204ENST00000488454 FBXL21Q9UKT6 434 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 FZD10Q9ULW2 581 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 DUSP12Q9UNI6 340 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.64□□□□□ -0.71
SKA1-204ENST00000488454 HS3ST4Q9Y661 456 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 ALG6Q9Y672 507 aa10.64□□□□□ -0.71
SKA1-204ENST00000488454 GOLGA6L9A6NEM1 432 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 NEDD8-MDP1E9PL57 170 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 TRDMT1O14717 391 aaKnown RBP10.63□□□□□ -0.71
SKA1-204ENST00000488454 DAPK3O43293 454 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 NARSO43776 548 aaKnown RBP10.63□□□□□ -0.71
SKA1-204ENST00000488454 CREB3O43889 395 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 MOCS3O95396 460 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 TNNT1P13805 278 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 GLULP15104 373 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 L1CAMP32004 1257 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 GJC1P36383 396 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 VCPP55072 806 aaKnown RBP10.63□□□□□ -0.71
SKA1-204ENST00000488454 SCAPQ12770 1279 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 KRT81Q14533 505 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 SLC44A4Q53GD3 710 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 FAM133BQ5BKY9 247 aaKnown RBP10.63□□□□□ -0.71
SKA1-204ENST00000488454 PIK3R6Q5UE93 754 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 TTC39BQ5VTQ0 682 aaPredicted RBP10.63□□□□□ -0.71
SKA1-204ENST00000488454 DAB2IPQ5VWQ8 1189 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 NADSYN1Q6IA69 706 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 C11orf63Q6NUN7 778 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 RFWD3Q6PCD5 774 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 MAP7D3Q8IWC1 876 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 RHOT1Q8IXI2 618 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 FAM217AQ8IXS0 508 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 KCTD6Q8NC69 237 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 HJURPQ8NCD3 748 aaPredicted RBP10.63□□□□□ -0.71
SKA1-204ENST00000488454 TEKT4Q8WW24 435 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 TSC1Q92574 1164 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 HSPH1Q92598 858 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 BHMTQ93088 406 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 ASIC4Q96FT7 647 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 RPRD1AQ96P16 312 aaPredicted RBP10.63□□□□□ -0.71
SKA1-204ENST00000488454 ALS2CR12Q96Q35 445 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 HPS4Q9NQG7 708 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 TMPRSS4Q9NRS4 437 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 TRMT1Q9NXH9 659 aaKnown RBP10.63□□□□□ -0.71
SKA1-204ENST00000488454 MUTYHQ9UIF7 546 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 SALL4Q9UJQ4 1053 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 AMFRQ9UKV5 643 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 VANGL2Q9ULK5 521 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 AP4E1Q9UPM8 1137 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.63□□□□□ -0.71
SKA1-204ENST00000488454 DENND4AQ7Z401 1863 aa10.63□□□□□ -0.71
SKA1-204ENST00000488454 ANAPC1Q9H1A4 1944 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 A0A0C4DFX4 3053 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 A0A0U1RQJ8 604 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 E9PAM4 449 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 H0Y626 953 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 ARNTLO00327 626 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 MAN2B1O00754 1011 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 HOXC11O43248 304 aaPredicted RBP10.62□□□□□ -0.71
SKA1-204ENST00000488454 TBL1XO60907 577 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 PALMO75781 387 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 CYP17A1P05093 508 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 RARAP10276 462 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 TYRP14679 529 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 MSNP26038 577 aaKnown RBP10.62□□□□□ -0.71
SKA1-204ENST00000488454 SLC6A4P31645 630 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 ZNF135P52742 658 aaPredicted RBP10.62□□□□□ -0.71
SKA1-204ENST00000488454 SMTNL2Q2TAL5 461 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 PPP6R3Q5H9R7 873 aaPredicted RBP10.62□□□□□ -0.71
SKA1-204ENST00000488454 KCNT1Q5JUK3 1230 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 MPP7Q5T2T1 576 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 LRRC38Q5VT99 294 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 RWDD4Q6NW29 188 aaKnown RBP10.62□□□□□ -0.71
SKA1-204ENST00000488454 FBXL22Q6P050 247 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 C1orf228Q6PIY5 440 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 PEX26Q7Z412 305 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 POLNQ7Z5Q5 900 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 CFAP52Q8N1V2 620 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 NAT16Q8N8M0 369 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 ZNF557Q8N988 423 aaPredicted RBP10.62□□□□□ -0.71
SKA1-204ENST00000488454 UBE2Q2Q8WVN8 375 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 ATRIPQ8WXE1 791 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 MSANTD3Q96H12 275 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 SHDQ96IW2 340 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 PRMT1Q99873 361 aaKnown RBP10.62□□□□□ -0.71
SKA1-204ENST00000488454 SNRNP25Q9BV90 132 aaKnown RBP10.62□□□□□ -0.71
SKA1-204ENST00000488454 CD320Q9NPF0 282 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 ANLNQ9NQW6 1124 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 GPATCH2LQ9NWQ4 482 aa10.62□□□□□ -0.71
SKA1-204ENST00000488454 DDX56Q9NY93 547 aaKnown RBP10.62□□□□□ -0.71
SKA1-204ENST00000488454 DONSONQ9NYP3 566 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms