RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 BEND5Q7L4P6 421 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 XYLT1Q86Y38 959 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 AHI1Q8N157 1196 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 CPXM2Q8N436 756 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 CCDC33Q8N5R6 958 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 TERB1Q8NA31 727 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 OR8K1Q8NGG5 319 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 GANCQ8TET4 914 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 WFIKKN2Q8TEU8 576 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 CFAP57Q96MR6 1250 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 MCEEQ96PE7 176 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 NCAPGQ9BPX3 1015 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 ZSWIM1Q9BR11 485 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 DDX23Q9BUQ8 820 aaKnown RBP8.32□□□□□ -1.08
USP40-216ENST00000485943 FAM126AQ9BYI3 521 aaPredicted RBP8.32□□□□□ -1.08
USP40-216ENST00000485943 SLC2A11Q9BYW1 496 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 TKTL2Q9H0I9 626 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 MUC3BQ9H195 1237 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 C11orf16Q9NQ32 467 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 DONSONQ9NYP3 566 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 SLC25A13Q9UJS0 675 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 NOCTQ9UK39 431 aaKnown RBP8.32□□□□□ -1.08
USP40-216ENST00000485943 GMEB2Q9UKD1 530 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 FBXO4Q9UKT5 387 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 ZDBF2Q9HCK1 2354 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 KCNU1A8MYU2 1149 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 ARNTLO00327 626 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 TIMM44O43615 452 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 CACNG3O60359 315 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 RNASEH1O60930 286 aaKnown RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 APBB3O95704 486 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 CYP1A1P04798 512 aaPredicted RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 CHRNB1P11230 501 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 HOXB2P14652 356 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 TACR2P21452 398 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 MMP8P22894 467 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 CDH5P33151 784 aaPredicted RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 GABRB2P47870 512 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 SLC6A11P48066 632 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 PGFP49763 221 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 NAP1L1P55209 391 aaKnown RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 CENPCQ03188 943 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 SFSWAPQ12872 951 aaKnown RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 DMC1Q14565 340 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 SPA17Q15506 151 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 SWI5Q1ZZU3 235 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 SLC25A52Q3SY17 297 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 ACCSLQ4AC99 568 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 USP39Q53GS9 565 aaKnown RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 CCDC122Q5T0U0 273 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 SYPL2Q5VXT5 272 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 FSTL4Q6MZW2 842 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 CHST9Q7L1S5 443 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 EMC1Q8N766 993 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 TXNDC5Q8NBS9 432 aaKnown RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 C3orf20Q8ND61 904 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 TPCN2Q8NHX9 752 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 RXFP2Q8WXD0 754 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 CTNNBL1Q8WYA6 563 aaPredicted RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 NKD2Q969F2 451 aaPredicted RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 VCPIP1Q96JH7 1222 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 HSD3B7Q9H2F3 369 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 ABCB8Q9NUT2 735 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 AIPL1Q9NZN9 384 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 KIAA1522Q9P206 1035 aaPredicted RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 NCDNQ9UBB6 729 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 CNOT8Q9UFF9 292 aaKnown RBP8.31□□□□□ -1.08
USP40-216ENST00000485943 ADAMTS1Q9UHI8 967 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 CYTH4Q9UIA0 394 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 VANGL2Q9ULK5 521 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 HPCAL4Q9UM19 191 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 CAPN11Q9UMQ6 739 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 F5P12259 2224 aa8.31□□□□□ -1.08
USP40-216ENST00000485943 TCRBV21S2A2A0A5A6 115 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 NPC1O15118 1278 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 PRPSAP2O60256 369 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 NDUFS2O75306 463 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 NEBLO76041 1014 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 FTLP02792 175 aaPredicted RBP8.3□□□□□ -1.08
USP40-216ENST00000485943 RHOCP08134 193 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 PABPC1P11940 636 aaKnown RBP8.3□□□□□ -1.08
USP40-216ENST00000485943 GZMAP12544 262 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 NTSR1P30989 418 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 CYLC1P35663 651 aaPredicted RBP8.3□□□□□ -1.08
USP40-216ENST00000485943 OPRD1P41143 372 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 WASP42768 502 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 RECQLP46063 649 aaPredicted RBP8.3□□□□□ -1.08
USP40-216ENST00000485943 KRT83P78385 493 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 ZXDBP98169 803 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 EIF4HQ15056 248 aaKnown RBP8.3□□□□□ -1.08
USP40-216ENST00000485943 TAF5Q15542 800 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 ELF2Q15723 593 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 HADHQ16836 314 aaKnown RBP8.3□□□□□ -1.08
USP40-216ENST00000485943 ANO7Q6IWH7 933 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 TSSK4Q6SA08 328 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 KIAA1324Q6UXG2 1013 aaKnown RBP8.3□□□□□ -1.08
USP40-216ENST00000485943 Q6ZNB5 142 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 Q6ZS52 159 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 FAM131BQ86XD5 332 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms