RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 MRPL43Q8N983 215 aaKnown RBP7.91□□□□□ -1.14
USP4-211ENST00000485450 GOLM1Q8NBJ4 401 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 EEF2KMTQ96G04 330 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 VPS50Q96JG6 964 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 ZNF558Q96NG5 402 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 SERPINB12Q96P63 405 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 ECSITQ9BQ95 431 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 C17orf80Q9BSJ5 609 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 PACSIN1Q9BY11 444 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 PCDHGA8Q9Y5G5 932 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 FAM92AA1XBS5 289 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 CCDC162PA2VCL2 907 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 GRXCR1A8MXD5 290 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 TISP43B9A030 160 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 FAM47E-STBD1D6RA91 191 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 RNASEH1O60930 286 aaKnown RBP7.91□□□□□ -1.14
USP4-211ENST00000485450 FGF18O76093 207 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 GCNT3O95395 438 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 CBX6O95503 412 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 CREB1P16220 341 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 STX2P32856 288 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 LIG4P49917 911 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 DR1Q01658 176 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 HNRNPDQ14103 355 aaKnown RBP7.91□□□□□ -1.14
USP4-211ENST00000485450 UBAP2Q5T6F2 1119 aaKnown RBP7.91□□□□□ -1.14
USP4-211ENST00000485450 JADE1Q6IE81 842 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 ZNF449Q6P9G9 518 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 SLFN11Q7Z7L1 901 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 TMEM173Q86WV6 379 aaPredicted RBP7.91□□□□□ -1.14
USP4-211ENST00000485450 LSMEM2Q8N112 164 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 SIX5Q8N196 739 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 VN1R2Q8NFZ6 395 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 OLIG1Q8TAK6 271 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 FBXO25Q8TCJ0 367 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 KBTBD7Q8WVZ9 684 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 IKZF4Q9H2S9 585 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 MRGBPQ9NV56 204 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 COMMD8Q9NX08 183 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 DNAJB4Q9UDY4 337 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 ADAM28Q9UKQ2 775 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 A0A087X0T9 212 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 FAM228BP0C875 321 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 S100A1P23297 94 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 ETFBP38117 255 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 RABGGTBP53611 331 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 PLTPP55058 493 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 RAB33AQ14088 237 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 MPP2Q14168 576 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 SKIV2LQ15477 1246 aaKnown RBP7.91□□□□□ -1.14
USP4-211ENST00000485450 KCTD19Q17RG1 926 aaPredicted RBP7.91□□□□□ -1.14
USP4-211ENST00000485450 LEXMQ3ZCV2 418 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 KAZNQ674X7 775 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 TWF2Q6IBS0 349 aaKnown RBP7.91□□□□□ -1.14
USP4-211ENST00000485450 ARHGEF18Q6ZSZ5 1173 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 GPIHBP1Q8IV16 184 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 TMEM86AQ8N2M4 240 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 FBXO22Q8NEZ5 403 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 HCAR2Q8TDS4 363 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 CASP10Q92851 521 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 SLC35C1Q96A29 364 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 MSTO1Q9BUK6 570 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 CLIC5Q9NZA1 410 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 GRHL1Q9NZI5 618 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 ANGPTL2Q9UKU9 493 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 NME7Q9Y5B8 376 aa7.91□□□□□ -1.14
USP4-211ENST00000485450 A8MXQ7 604 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 KCNJ13O60928 360 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 ZBED1O96006 694 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 RARGP13631 454 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 PTPN2P17706 415 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 CES1P23141 567 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 FKBP3Q00688 224 aaKnown RBP7.9□□□□□ -1.14
USP4-211ENST00000485450 BFSP1Q12934 665 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 DHX34Q14147 1143 aaKnown RBP7.9□□□□□ -1.14
USP4-211ENST00000485450 GRIN2CQ14957 1233 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 WDR45BQ5MNZ6 344 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 ELMSAN1Q6PJG2 1045 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 SATL1Q86VE3 508 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 NUP93Q8N1F7 819 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 ANKRD42Q8N9B4 389 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 STMN2Q93045 179 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 PABPC5Q96DU9 382 aaKnown RBP7.9□□□□□ -1.14
USP4-211ENST00000485450 LRCH3Q96II8 777 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 RUNDC3BQ96NL0 473 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 CDX2Q99626 313 aaPredicted RBP7.9□□□□□ -1.14
USP4-211ENST00000485450 LRRC3Q9BY71 257 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 FBXW11Q9UKB1 542 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 DSEQ9UL01 958 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 SNX9Q9Y5X1 595 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 ATP8B3O60423 1300 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 XPOTO43592 962 aaKnown RBP7.9□□□□□ -1.14
USP4-211ENST00000485450 CCDC22O60826 627 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 CLASP2O75122 1294 aaKnown RBP7.9□□□□□ -1.14
USP4-211ENST00000485450 CSDE1O75534 798 aaKnown RBP7.9□□□□□ -1.14
USP4-211ENST00000485450 GLP2RO95838 553 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 ASS1P00966 412 aaKnown RBP7.9□□□□□ -1.14
USP4-211ENST00000485450 CXCL8P10145 99 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 FOXN2P32314 431 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 LTBRP36941 435 aa7.9□□□□□ -1.14
USP4-211ENST00000485450 VPS41P49754 854 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms