RNA–Protein interactions for RNA: ENST00000483495.5

CPNE1-225, Transcript of copine 1, human

TSL 5

Gene CPNE1, Length 1,853 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-225	ENST00000483495	CYS1	Q717R9	158 aa		13.61	□□□□□ -0.23
CPNE1-225	ENST00000483495	SPATS2	Q86XZ4	545 aa	Known RBP	13.61	□□□□□ -0.23
CPNE1-225	ENST00000483495	TTC9B	Q8N6N2	239 aa		13.61	□□□□□ -0.23
CPNE1-225	ENST00000483495	SLC39A13	Q96H72	371 aa		13.61	□□□□□ -0.23
CPNE1-225	ENST00000483495	SGSM3	Q96HU1	749 aa		13.61	□□□□□ -0.23
CPNE1-225	ENST00000483495	B3GALT6	Q96L58	329 aa		13.61	□□□□□ -0.23
CPNE1-225	ENST00000483495	VAT1	Q99536	393 aa		13.61	□□□□□ -0.23
CPNE1-225	ENST00000483495	COMMD8	Q9NX08	183 aa		13.61	□□□□□ -0.23
CPNE1-225	ENST00000483495	CLIC5	Q9NZA1	410 aa		13.61	□□□□□ -0.23
CPNE1-225	ENST00000483495	SMG5	Q9UPR3	1016 aa	Known RBP	13.61	□□□□□ -0.23
CPNE1-225	ENST00000483495	TLR6	Q9Y2C9	796 aa		13.61	□□□□□ -0.23
CPNE1-225	ENST00000483495	FGF10	O15520	208 aa	Predicted RBP	13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	RTN3	O95197	1032 aa	Predicted RBP	13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	CP	P00450	1065 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	PSMB4	P28070	264 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	GRIA1	P42261	906 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	ATN1	P54259	1190 aa	Predicted RBP	13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	KBTBD12	Q3ZCT8	623 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	TMEM173	Q86WV6	379 aa	Predicted RBP	13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	PDCD7	Q8N8D1	485 aa	Known RBP	13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	DENND1A	Q8TEH3	1009 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	BCL7C	Q8WUZ0	217 aa	Predicted RBP	13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	CKAP2	Q8WWK9	683 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	FCRL2	Q96LA5	508 aa	Predicted RBP	13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	C1orf74	Q96LT6	269 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	SMC6	Q96SB8	1091 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	TTPAL	Q9BTX7	342 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	NKIRAS1	Q9NYS0	192 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	SEPT10	Q9P0V9	454 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	GMIP	Q9P107	970 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	TRHDE	Q9UKU6	1024 aa		13.6	□□□□□ -0.23
CPNE1-225	ENST00000483495	KCNK1	O00180	336 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	TYROBP	O43914	113 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	SUN1	O94901	812 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	APOE	P02649	317 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	HAPLN1	P10915	354 aa	Predicted RBP	13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	SLC2A3	P11169	496 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	CPB1	P15086	417 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	YWHAQ	P27348	245 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	PSEN1	P49768	467 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	TLE2	Q04725	743 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	QPCT	Q16769	361 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	STEAP4	Q687X5	459 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	UNC5A	Q6ZN44	842 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	PID1	Q7Z2X4	250 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	LZTR1	Q8N653	840 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	ANKRD42	Q8N9B4	389 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	TBC1D31	Q96DN5	1066 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	CFAP36	Q96G28	342 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	TSGA13	Q96PP4	275 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	GORASP1	Q9BQQ3	440 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	CEP41	Q9BYV8	373 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	PPP1R12C	Q9BZL4	782 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	FAM107B	Q9H098	131 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	CATSPERB	Q9H7T0	1116 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	KLHL8	Q9P2G9	620 aa	Predicted RBP	13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	ZNF180	Q9UJW8	692 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	TBX21	Q9UL17	535 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	PCDHA11	Q9Y5I1	949 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	ZNF638	Q14966	1978 aa	Known RBP	13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495		A0A1W2PPM1	405 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	SDR42E2	A6NKP2	422 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	WASH4P	A8MWX3	477 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	NT5C1B-RDH14	C9J2C7	533 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	FAM155B	O75949	473 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	SRGAP2B	P0DMP2	458 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	MLLT6	P55198	1093 aa	Predicted RBP	13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	COG7	P83436	770 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	LRRC14	Q15048	493 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	TRIM60	Q495X7	471 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	TEX44	Q53QW1	395 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	RNF19B	Q6ZMZ0	732 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	TAS1R1	Q7RTX1	841 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	PRPF39	Q86UA1	669 aa	Known RBP	13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	CCNJL	Q8IV13	435 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	ARHGAP12	Q8IWW6	846 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	RNF168	Q8IYW5	571 aa	Predicted RBP	13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	MPP5	Q8N3R9	675 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	STKLD1	Q8NE28	680 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	GSDMB	Q8TAX9	411 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	VWCE	Q96DN2	955 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	MRRF	Q96E11	262 aa	Known RBP	13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	SIK2	Q9H0K1	926 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	GBA3	Q9H227	469 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	CRISPLD1	Q9H336	500 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	KIF9	Q9HAQ2	790 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	FNIP2	Q9P278	1114 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	HS3ST4	Q9Y661	456 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	SCN5A	Q14524	2016 aa		13.59	□□□□□ -0.23
CPNE1-225	ENST00000483495	IQANK1	A0A1B0GTG1	560 aa		13.58	□□□□□ -0.24
CPNE1-225	ENST00000483495	ERI2	A8K979	691 aa	Known RBP	13.58	□□□□□ -0.24
CPNE1-225	ENST00000483495	PIAS1	O75925	651 aa		13.58	□□□□□ -0.24
CPNE1-225	ENST00000483495	ASMTL	O95671	621 aa		13.58	□□□□□ -0.24
CPNE1-225	ENST00000483495	AP2A1	O95782	977 aa		13.58	□□□□□ -0.24
CPNE1-225	ENST00000483495	CD68	P34810	354 aa	Predicted RBP	13.58	□□□□□ -0.24
CPNE1-225	ENST00000483495	PBX3	P40426	434 aa		13.58	□□□□□ -0.24
CPNE1-225	ENST00000483495	IFNAR2	P48551	515 aa		13.58	□□□□□ -0.24
CPNE1-225	ENST00000483495	WDR4	P57081	412 aa	Known RBP	13.58	□□□□□ -0.24
CPNE1-225	ENST00000483495	ZBTB17	Q13105	803 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms