RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 TIPRLO75663 272 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 ADSSP30520 456 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 CLK2P49760 499 aaKnown RBP13.82□□□□□ -0.2
USP42-206ENST00000479544 NDST1P52848 882 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 RBP5P82980 135 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 FASTKQ14296 549 aaKnown RBP13.82□□□□□ -0.2
USP42-206ENST00000479544 LPIN1Q14693 890 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 SGO1Q5FBB7 561 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.82□□□□□ -0.2
USP42-206ENST00000479544 NOL6Q9H6R4 1146 aaKnown RBP13.82□□□□□ -0.2
USP42-206ENST00000479544 BAZ2AQ9UIF9 1905 aaKnown RBP13.82□□□□□ -0.2
USP42-206ENST00000479544 STX16-NPEPL1H3BU86 382 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 CCDC130P13994 396 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 MPSTP25325 297 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 CBX3Q13185 183 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 DGCR6Q14129 220 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 KRT72Q14CN4 511 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 PLCL1Q15111 1095 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 MFSD4BQ5TF39 518 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 CGB2Q6NT52 195 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 KYAT3Q6YP21 454 aaKnown RBP13.82□□□□□ -0.2
USP42-206ENST00000479544 ANKS1BQ7Z6G8 1248 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 DHFR2Q86XF0 187 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 C12orf29Q8N999 325 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.82□□□□□ -0.2
USP42-206ENST00000479544 LRRC40Q9H9A6 602 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 C17orf75Q9HAS0 396 aa13.82□□□□□ -0.2
USP42-206ENST00000479544 MICAL2O94851 1124 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 VAPBO95292 243 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 LSM8O95777 96 aaKnown RBP13.81□□□□□ -0.2
USP42-206ENST00000479544 SNHG28P0DPA3 235 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 ATP6V1B2P21281 511 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 PIK3R1P27986 724 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 TM4SF1P30408 202 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 SPIRE1Q08AE8 756 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 MOGSQ13724 837 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 ADRM1Q16186 407 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 TMEM198Q66K66 360 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 SCN4BQ8IWT1 228 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 HTR3CQ8WXA8 447 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 AZIN2Q96A70 460 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 TMEM176AQ96HP8 235 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 ARMC7Q9H6L4 198 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 FAM198AQ9UFP1 575 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 VANGL2Q9ULK5 521 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 PRRC2BQ5JSZ5 2229 aaKnown RBP13.81□□□□□ -0.2
USP42-206ENST00000479544 WDR46O15213 610 aaKnown RBP13.81□□□□□ -0.2
USP42-206ENST00000479544 KRT8P05787 483 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 PSMB4P28070 264 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 GRIA1P42261 906 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 WASHC5Q12768 1159 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 KIZQ2M2Z5 673 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 EFCAB12Q6NXP0 572 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 MON1BQ7L1V2 547 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 CPB2Q96IY4 423 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 GPRC5DQ9NZD1 345 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 HACD3Q9P035 362 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 PSMD13Q9UNM6 376 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 FZD1Q9UP38 647 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 RGPD2P0DJD1 1756 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 H0Y626 953 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 ITM2AO43736 263 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 SNX2O60749 519 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 TRIM16O95361 564 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 ZBTB11O95625 1053 aaPredicted RBP13.81□□□□□ -0.2
USP42-206ENST00000479544 ESRRBO95718 433 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 GJB1P08034 283 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 NEK2P51955 445 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 GTF2H3Q13889 308 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 PGM5Q15124 567 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 CYP51A1Q16850 503 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 PITRM1Q5JRX3 1037 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 SH3PXD2AQ5TCZ1 1133 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 STK32CQ86UX6 486 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 CCDC103Q8IW40 242 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 GMCL1P1Q8NEA9 526 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 LENG9Q96B70 501 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 ZNF518BQ9C0D4 1074 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 RERGLQ9H628 205 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 PLEKHA5Q9HAU0 1116 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 EML4Q9HC35 981 aaKnown RBP13.81□□□□□ -0.2
USP42-206ENST00000479544 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.81□□□□□ -0.2
USP42-206ENST00000479544 PPME1Q9Y570 386 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 ASTN2O75129 1339 aaPredicted RBP13.81□□□□□ -0.2
USP42-206ENST00000479544 GMPRP36959 345 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 GBE1Q04446 702 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 SEPT1Q8WYJ6 367 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 CPXM1Q96SM3 734 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 EBNA1BP2Q99848 306 aaKnown RBP13.81□□□□□ -0.2
USP42-206ENST00000479544 TXLNGYQ9BZA5 131 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 XPNPEP1Q9NQW7 623 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 TRNAU1APQ9NX07 287 aaKnown RBP13.81□□□□□ -0.2
USP42-206ENST00000479544 NCKIPSDQ9NZQ3 722 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 SNCAIPQ9Y6H5 919 aa13.81□□□□□ -0.2
USP42-206ENST00000479544 CSH1P0DML2 217 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 CSH2P0DML3 217 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 TCF7P36402 384 aaPredicted RBP13.8□□□□□ -0.2
USP42-206ENST00000479544 DLG2Q15700 870 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 AAGABQ6PD74 315 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 PHF13Q86YI8 300 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms