RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 YJEFN3A6XGL0 299 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 E7ENQ6 273 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 AP3B1O00203 1094 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 IGLV3-25P01717 112 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 MX2P20592 715 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 KCNJ2P63252 427 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 MTM1Q13496 603 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 ATG16L1Q676U5 607 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 C3orf58Q8NDZ4 430 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 SLC7A14Q8TBB6 771 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 NDRG1Q92597 394 aaKnown RBP12.55□□□□□ -0.4
PTPRF-212ENST00000477970 DPF3Q92784 378 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 TACO1Q9BSH4 297 aaKnown RBP12.55□□□□□ -0.4
PTPRF-212ENST00000477970 SPC25Q9HBM1 224 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 NOD2Q9HC29 1040 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 GGT7Q9UJ14 662 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 MYBPHLA2RUH7 354 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 PIAS1O75925 651 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 DNAJB2P25686 324 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 AP1B1Q10567 949 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 GRIK3Q13003 919 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 CTC1Q2NKJ3 1217 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 SYCP2LQ5T4T6 812 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 CFAP61Q8NHU2 1237 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 DEPDC1BQ8WUY9 529 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 KLF6Q99612 283 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-212ENST00000477970 SIKE1Q9BRV8 207 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 OSBPL2Q9H1P3 480 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 MAD1L1Q9Y6D9 718 aa12.55□□□□□ -0.4
PTPRF-212ENST00000477970 CCDC85CA6NKD9 419 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 MEIS3P2A8K0S8 358 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 CAPN9O14815 690 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 ADAMTS4O75173 837 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 AP2A1O95782 977 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 INHAP05111 366 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 DLDP09622 509 aaKnown RBP12.54□□□□□ -0.4
PTPRF-212ENST00000477970 RARBP10826 455 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 ERCC2P18074 760 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 SERPINB6P35237 376 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 SF3A3Q12874 501 aaKnown RBP eCLIP12.54□□□□□ -0.4
PTPRF-212ENST00000477970 MAPRE1Q15691 268 aaKnown RBP12.54□□□□□ -0.4
PTPRF-212ENST00000477970 INSCQ1MX18 579 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 GNASQ5JWF2 1037 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 KCTD11Q693B1 232 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 TRMT10BQ6PF06 316 aaKnown RBP12.54□□□□□ -0.4
PTPRF-212ENST00000477970 GPRIN1Q7Z2K8 1008 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 TRIB2Q92519 343 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 SKA1Q96BD8 255 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 COLEC11Q9BWP8 271 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 KCNK13Q9HB14 408 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 ADAM28Q9UKQ2 775 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 SEPT4O43236 478 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 T-ENOLP0DO92 83 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 PTPN3P26045 913 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 MNAT1P51948 309 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 TPI1P60174 286 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 KRT72Q14CN4 511 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 TEX44Q53QW1 395 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 PLEKHG4Q58EX7 1191 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 ARMC3Q5W041 872 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 CD300LGQ6UXG3 332 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 CDHR3Q6ZTQ4 885 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 METTL23Q86XA0 190 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 SH3TC2Q8TF17 1288 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 PGBD4Q96DM1 585 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 TSGA13Q96PP4 275 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 GORASP1Q9BQQ3 440 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 CRISPLD2Q9H0B8 497 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 NPHS2Q9NP85 383 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 CASS4Q9NQ75 786 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 PLXNA3P51805 1871 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 A0A0U1RQF3 1178 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 WDR27A2RRH5 827 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 CACNG3O60359 315 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 SNNO75324 88 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-212ENST00000477970 TYMPP19971 482 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 GRIA1P42261 906 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 MAGEA12P43365 314 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 IFRD2Q12894 506 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-212ENST00000477970 NME3Q13232 169 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 CRYMQ14894 314 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 TIGD5Q53EQ6 642 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 DCLRE1AQ6PJP8 1040 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 CLNKQ7Z7G1 428 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.54□□□□□ -0.4
PTPRF-212ENST00000477970 PDCD7Q8N8D1 485 aaKnown RBP12.54□□□□□ -0.4
PTPRF-212ENST00000477970 KLHDC9Q8NEP7 349 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 EPAS1Q99814 870 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 GBA3Q9H227 469 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 TMEM30AQ9NV96 361 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 KCNK4Q9NYG8 393 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 ZFP69BQ9UJL9 534 aa12.54□□□□□ -0.4
PTPRF-212ENST00000477970 PSMD3O43242 534 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 CREB3O43889 395 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 KRT16P08779 473 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 CCL5P13501 91 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 PSMB4P28070 264 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 HOXC13P31276 330 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 SCNN1GP51170 649 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 PREPLQ4J6C6 727 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms