RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ZNF560Q96MR9 790 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 FAM129BQ96TA1 746 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 MYOCQ99972 504 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 CCDC3Q9BQI4 270 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 ESYT1Q9BSJ8 1104 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 B3GNT5Q9BYG0 378 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 ASB7Q9H672 318 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 FBRSQ9HAH7 460 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 NMUR1Q9HB89 426 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 FZD3Q9NPG1 666 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 PRDM8Q9NQV8 689 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 GPR27Q9NS67 375 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 SEPT10Q9P0V9 454 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 CYTH4Q9UIA0 394 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 CDH9Q9ULB4 789 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 KIAA1024Q9UPX6 916 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 LOXL2Q9Y4K0 774 aa5.03□□□□□ -1.6
USP4-209ENST00000475873 NSD1Q96L73 2696 aaPredicted RBP5.03□□□□□ -1.6
USP4-209ENST00000475873 ARHGEF17Q96PE2 2063 aaPredicted RBP5.03□□□□□ -1.6
USP4-209ENST00000475873 PRRC2AP48634 2157 aaKnown RBP5.02□□□□□ -1.61
USP4-209ENST00000475873 MAP1AP78559 2803 aaPredicted RBP5.02□□□□□ -1.61
USP4-209ENST00000475873 NPHP3-ACAD11A0A0J9YXS1 232 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 TTLL8A6PVC2 850 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 HNRNPDLO14979 420 aaKnown RBP5.02□□□□□ -1.61
USP4-209ENST00000475873 BEST1O76090 585 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 SORBS2O94875 1100 aaKnown RBP5.02□□□□□ -1.61
USP4-209ENST00000475873 NEFLP07196 543 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 PRKAR1AP10644 381 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 PLS3P13797 630 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 PRLRP16471 622 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 CCKBRP32239 447 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 SLC8A1P32418 973 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 LHX1P48742 406 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 LIG4P49917 911 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 NCKAP1LP55160 1127 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 CLDN2P57739 230 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 KRTAP10-9P60411 292 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 EIF3IQ13347 325 aaKnown RBP5.02□□□□□ -1.61
USP4-209ENST00000475873 SPIDRQ14159 915 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 SLC45A4Q5BKX6 768 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 C9orf64Q5T6V5 341 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 CHST9Q7L1S5 443 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 GPRIN1Q7Z2K8 1008 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 FBXL16Q8N461 479 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 KCTD17Q8N5Z5 321 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 TEX19Q8NA77 164 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 PDZD8Q8NEN9 1154 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 TPCN2Q8NHX9 752 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 PRR7Q8TB68 274 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 LMLNQ96KR4 655 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 MRGPRX3Q96LB0 322 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 FIZ1Q96SL8 496 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 NAP1L4Q99733 375 aaKnown RBP5.02□□□□□ -1.61
USP4-209ENST00000475873 MRPL45Q9BRJ2 306 aaKnown RBP5.02□□□□□ -1.61
USP4-209ENST00000475873 LARP6Q9BRS8 491 aaKnown RBP5.02□□□□□ -1.61
USP4-209ENST00000475873 MSTO1Q9BUK6 570 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 BOCQ9BWV1 1114 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 TCEAL2Q9H3H9 227 aaPredicted RBP5.02□□□□□ -1.61
USP4-209ENST00000475873 SYNDIG1Q9H7V2 258 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 C17orf75Q9HAS0 396 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.02□□□□□ -1.61
USP4-209ENST00000475873 DDX19AQ9NUU7 478 aaKnown RBP5.02□□□□□ -1.61
USP4-209ENST00000475873 PNMA8BQ9ULN7 279 aaPredicted RBP5.02□□□□□ -1.61
USP4-209ENST00000475873 FZD4Q9ULV1 537 aa5.02□□□□□ -1.61
USP4-209ENST00000475873 SLC12A8A0AV02 714 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 EFCAB7A8K855 629 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 PP2D1A8MPX8 630 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 TIMM44O43615 452 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 GCATO75600 419 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 RTN3O95197 1032 aaPredicted RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 DLDP09622 509 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 JMJD7P0C870 316 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 ALPPL2P10696 532 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 CCL4P13236 92 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 GOT1P17174 413 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 PTPN1P18031 435 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 WARSP23381 471 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 GUCY2CP25092 1073 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 UGT1A3P35503 534 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 CCT6AP40227 531 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 PNPLA4P41247 253 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 PSMD8P48556 350 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 SGSHP51688 502 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 TAS2R38P59533 333 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 CCL7P80098 99 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 ZFP36L1Q07352 338 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 CDC20Q12834 499 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 TOB2Q14106 344 aaPredicted RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 FZD2Q14332 565 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 DHX8Q14562 1220 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 STAT4Q14765 748 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 C16orf72Q14CZ0 275 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 NR0B2Q15466 257 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 KYAT1Q16773 422 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 DEFB109BQ30KR1 87 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 HNRNPA1L2Q32P51 320 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 NADK2Q4G0N4 442 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 HS1BP3Q53T59 392 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 MBLAC2Q68D91 279 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 SP5Q6BEB4 398 aaPredicted RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms