RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ACAP3Q96P50 834 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 ADAMTS10Q9H324 1103 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 HIPK3Q9H422 1215 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 ETNK2Q9NVF9 386 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 PAK1IP1Q9NWT1 392 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 FNDC3AQ9Y2H6 1198 aaKnown RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 AREL1O15033 823 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 SCO2O43819 266 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 GABBR2O75899 941 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 IL18RAPO95256 599 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 MATN4O95460 622 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 BMP1P13497 986 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 HCAR3P49019 387 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 FOXD4Q12950 439 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 ABCB5Q2M3G0 1257 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 PRUNE1Q86TP1 453 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 AMIGO3Q86WK7 504 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 ELMOD1Q8N336 334 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 TRIM56Q9BRZ2 755 aaKnown RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 APOL6Q9BWW8 343 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 KLHL4Q9C0H6 718 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 ARNT2Q9HBZ2 717 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 SEPT9Q9UHD8 586 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 HACL1Q9UJ83 578 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 C9IYK1 514 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 SLCO1B7G3V0H7 640 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 H0Y858 1186 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 C6orf222P0C671 652 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 MAGEA10P43363 369 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 QARSP47897 775 aaKnown RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 CUL2Q13617 745 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 MESDQ14696 234 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 DPYSL2Q16555 572 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 PTPN20Q4JDL3 420 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 ATG16L1Q676U5 607 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 LAIR2Q6ISS4 152 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 MIER3Q7Z3K6 550 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 FBXW8Q8N3Y1 598 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 TTC39CQ8N584 583 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 GSTCDQ8NEC7 633 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 BSNDQ8WZ55 320 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 OSBPL11Q9BXB4 747 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 TLR9Q9NR96 1032 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 SFMBT1Q9UHJ3 866 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 ANAPC7Q9UJX3 599 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 KIAA1257Q9ULG3 409 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 ADAM23O75077 832 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 CABYRO75952 493 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 PHBP35232 272 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 VPS41P49754 854 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 PSMD7P51665 324 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 PSMC5P62195 406 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 GTF2IP78347 998 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 CACNB1Q02641 598 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 NFIAQ12857 509 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 CAMK2BQ13554 666 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 PRR23BQ6ZRT6 265 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 GDAP1Q8TB36 358 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 SHKBP1Q8TBC3 707 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 ACDQ96AP0 544 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 MCUR1Q96AQ8 359 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 SLCO4A1Q96BD0 722 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 SNX18Q96RF0 628 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 RMDN3Q96TC7 470 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 APOBEC2Q9Y235 224 aaKnown RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 FAM32AQ9Y421 112 aaKnown RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 FAM237BA0A1B0GVD1 139 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 MOXD2PA6NHM9 499 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 HDAC3O15379 428 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 CRTAMO95727 393 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 DLATP10515 647 aaKnown RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 ESRRAP11474 423 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 NSFP46459 744 aaKnown RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 JAK3P52333 1124 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 MPP1Q00013 466 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 FOXM1Q08050 763 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 PDK1Q15118 436 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 C6orf10Q5SRN2 563 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 ACO2Q99798 780 aaKnown RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 C19orf43Q9BQ61 176 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 OSBPL10Q9BXB5 764 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 VPS33BQ9H267 617 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 AKIP1Q9NQ31 210 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 PNPLA3Q9NST1 481 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 PAK5Q9P286 719 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 SGK1O00141 431 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 MYL2P10916 166 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 STAT3P40763 770 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ELK3P41970 407 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 IL1RL1Q01638 556 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 AGAP7PQ5VUJ5 663 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 LCN8Q6JVE9 175 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 CYP2U1Q7Z449 544 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 C4orf33Q8N1A6 199 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 HSPH1Q92598 858 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 MUC13Q9H3R2 512 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 SLC38A10Q9HBR0 1119 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ANKHQ9HCJ1 492 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 AGPAT4Q9NRZ5 378 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 POLLQ9UGP5 575 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms