RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CCDC172P0C7W6 258 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 MAOBP27338 520 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 RPL34P49207 117 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 PSEN1P49768 467 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 PDCLQ13371 301 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 TAF3Q5VWG9 929 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 PM20D1Q6GTS8 502 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 KLHDC10Q6PID8 442 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 HTR3DQ70Z44 454 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 ZNF677Q86XU0 584 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 PASD1Q8IV76 773 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 SIX6OS1Q8N1H7 587 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 SCML4Q8N228 414 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 KCNV2Q8TDN2 545 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 FOXJ1Q92949 421 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 SLC4A5Q9BY07 1137 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 ULBP1Q9BZM6 244 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 NACA2Q9H009 215 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 PIEZO2Q9H5I5 2752 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 GAREM1Q9H706 876 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 CNGB3Q9NQW8 809 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 ARHGEF4Q9NR80 690 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 CYP8B1Q9UNU6 501 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 CEP83Q9Y592 693 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 PCDHGB2Q9Y5G2 931 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 SPTA1P02549 2419 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 A0A1B0GTW7 788 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 PLK4O00444 970 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 FLRT2O43155 660 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 ZBTB24O43167 697 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 TLX3O43711 291 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 GABBR2O75899 941 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 CER1O95813 267 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 MMEP08473 750 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 ADH5P11766 374 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 LCP1P13796 627 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 FERP16591 822 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 CDH5P33151 784 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 ACADSBP45954 432 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 PGFP49763 221 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 CDR2Q01850 454 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 ARID5AQ03989 594 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 GAD2Q05329 585 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 SRSF1Q07955 248 aaKnown RBP eCLIP12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 GOLGA8FQ08AF8 430 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 GOLGA8DPQ0D2H9 430 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 PREPLQ4J6C6 727 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 LY6G5CQ5SRR4 150 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 BHLHA9Q7RTU4 235 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 TRMT11Q7Z4G4 463 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 ARHGAP18Q8N392 663 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 WDTC1Q8N5D0 677 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 C1orf131Q8NDD1 294 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 SLC20A1Q8WUM9 679 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 NOX5Q96PH1 765 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 KLF16Q9BXK1 252 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 TRIM5Q9C035 493 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 PDCL3Q9H2J4 239 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 NMUR1Q9HB89 426 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 IL21RQ9HBE5 538 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 ST7Q9NRC1 585 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 CLIC5Q9NZA1 410 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 AIPL1Q9NZN9 384 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 CYTH4Q9UIA0 394 aa12.4□□□□□ -0.42
SQSTM1-206ENST00000466342 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.4□□□□□ -0.421e-6■□□□□ 10.8
SQSTM1-206ENST00000466342 A0A1W2PQH9 124 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 ERVH48-1M5A8F1 160 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 PIK3R2O00459 728 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 FBXO21O94952 628 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 LSM8O95777 96 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 TBX18O95935 607 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 GYPCP04921 128 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 RARGP13631 454 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 HOXB2P14652 356 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 CHRNB2P17787 502 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 MATKP42679 507 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 DAOAP59103 153 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 FMO1Q01740 532 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 TRIM14Q14142 442 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 ASIC2Q16515 512 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 SFMBT2Q5VUG0 894 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 BTBD8Q5XKL5 378 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 SPECC1LQ69YQ0 1117 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 IL27RAQ6UWB1 636 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 TRIM72Q6ZMU5 477 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 NUDT18Q6ZVK8 323 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 IRF2BP2Q7Z5L9 587 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 SCD5Q86SK9 330 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 TADA2BQ86TJ2 420 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 TMEM110Q86TL2 294 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 C12orf40Q86WS4 652 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 TMPRSS12Q86WS5 348 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 VSTM4Q8IW00 320 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 ZNF513Q8N8E2 541 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 TMEM35BQ8NCS4 154 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 ZNF397Q8NF99 534 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 DNASE2BQ8WZ79 361 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 IRGQQ8WZA9 623 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 NXPE2Q96DL1 559 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms