RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 MRGPRX3Q96LB0 322 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 HSFY1Q96LI6 401 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 PABPC3Q9H361 631 aaKnown RBP23.48■■□□□ 1.35
USP4-208ENST00000464168 ADAMTS20P59510 1910 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 KNTC1P50748 2209 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 M0QYV0 167 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 PMM2O15305 246 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 BRD2P25440 801 aaKnown RBP23.47■■□□□ 1.35
USP4-208ENST00000464168 GRK6P43250 576 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 CCT8P50990 548 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 RPS24P62847 133 aaKnown RBP23.47■■□□□ 1.35
USP4-208ENST00000464168 COL28A1Q2UY09 1125 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 HNRNPA1L2Q32P51 320 aaKnown RBP23.47■■□□□ 1.35
USP4-208ENST00000464168 KIAA0895LQ68EN5 471 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 GANCQ8TET4 914 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 ERCC4Q92889 916 aaPredicted RBP23.47■■□□□ 1.35
USP4-208ENST00000464168 NT5C1BQ96P26 610 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 FBXL12Q9NXK8 326 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 DKK4Q9UBT3 224 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 SERGEFQ9UGK8 458 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 SCML1Q9UN30 329 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 NCKAP1Q9Y2A7 1128 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 RAXQ9Y2V3 346 aa23.47■■□□□ 1.35
USP4-208ENST00000464168 SIN3BO75182 1162 aa23.46■■□□□ 1.35
USP4-208ENST00000464168 FBXO21O94952 628 aa23.46■■□□□ 1.35
USP4-208ENST00000464168 GALCP54803 685 aa23.46■■□□□ 1.35
USP4-208ENST00000464168 ST8SIA6P61647 398 aa23.46■■□□□ 1.35
USP4-208ENST00000464168 ACAP1Q15027 740 aa23.46■■□□□ 1.35
USP4-208ENST00000464168 STILQ15468 1287 aa23.46■■□□□ 1.35
USP4-208ENST00000464168 FSCBQ5H9T9 825 aa23.46■■□□□ 1.35
USP4-208ENST00000464168 PDZD3Q86UT5 571 aa23.46■■□□□ 1.35
USP4-208ENST00000464168 GALNT15Q8N3T1 639 aa23.46■■□□□ 1.35
USP4-208ENST00000464168 LMO3Q8TAP4 145 aa23.46■■□□□ 1.35
USP4-208ENST00000464168 MIS12Q9H081 205 aa23.46■■□□□ 1.35
USP4-208ENST00000464168 METTL14Q9HCE5 456 aaKnown RBP23.46■■□□□ 1.35
USP4-208ENST00000464168 TRABD2BA6NFA1 517 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 FAM47DPA6NHR8 397 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 VILLO15195 856 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 PAPSS1O43252 624 aaPredicted RBP23.45■■□□□ 1.34
USP4-208ENST00000464168 ASLP04424 464 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 RACK1P63244 317 aaKnown RBP23.45■■□□□ 1.34
USP4-208ENST00000464168 CAMK2BQ13554 666 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 ARID5BQ14865 1188 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 C9orf64Q5T6V5 341 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 MMS22LQ6ZRQ5 1243 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 ADAT2Q7Z6V5 191 aaKnown RBP23.45■■□□□ 1.34
USP4-208ENST00000464168 DHX40Q8IX18 779 aaKnown RBP23.45■■□□□ 1.34
USP4-208ENST00000464168 SCUBE3Q8IX30 993 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 PPM1KQ8N3J5 372 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 CARNMT1Q8N4J0 409 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 KDM1BQ8NB78 822 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 ENGASEQ8NFI3 743 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 DQX1Q8TE96 717 aaKnown RBP23.45■■□□□ 1.34
USP4-208ENST00000464168 SLC39A13Q96H72 371 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 DDX50Q9BQ39 737 aaKnown RBP23.45■■□□□ 1.34
USP4-208ENST00000464168 NUCKS1Q9H1E3 243 aaKnown RBP23.45■■□□□ 1.34
USP4-208ENST00000464168 EBF2Q9HAK2 575 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 TLR6Q9Y2C9 796 aa23.45■■□□□ 1.34
USP4-208ENST00000464168 ASXL3Q9C0F0 2248 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 A0A1W2PPC4 97 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 RNASEH1O60930 286 aaKnown RBP23.44■■□□□ 1.34
USP4-208ENST00000464168 SMC2O95347 1197 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 CTSOP43234 321 aaPredicted RBP23.44■■□□□ 1.34
USP4-208ENST00000464168 IL9RQ01113 521 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 SMAD1Q15797 465 aaKnown RBP23.44■■□□□ 1.34
USP4-208ENST00000464168 CST6Q15828 149 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 MS4A13Q5J8X5 152 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 NCEH1Q6PIU2 408 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 CFAP52Q8N1V2 620 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 HNRNPLLQ8WVV9 542 aaKnown RBP23.44■■□□□ 1.34
USP4-208ENST00000464168 SMARCE1Q969G3 411 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 ACE2Q9BYF1 805 aaPredicted RBP23.44■■□□□ 1.34
USP4-208ENST00000464168 NEUROG2Q9H2A3 272 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 ERVW-1Q9UQF0 538 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 NAALADL1Q9UQQ1 740 aa23.44■■□□□ 1.34
USP4-208ENST00000464168 TMEM131Q92545 1883 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 FAM149AA5PLN7 773 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 C10orf142B7Z368 130 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 MID1O15344 667 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 DFNA5O60443 496 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 RPL34P49207 117 aaKnown RBP23.43■■□□□ 1.34
USP4-208ENST00000464168 C21orf59P57076 290 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 CYP4F3Q08477 520 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 NNTQ13423 1086 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 DCAF6Q58WW2 860 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 PITRM1Q5JRX3 1037 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 PRAMEF14Q5SWL7 426 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 RRAGAQ7L523 313 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 MMAAQ8IVH4 418 aaKnown RBP23.43■■□□□ 1.34
USP4-208ENST00000464168 ADAM32Q8TC27 787 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 CEP63Q96MT8 703 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 SLC6A18Q96N87 628 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 SERPINB11Q96P15 392 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 FAM129BQ96TA1 746 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 GTPBP4Q9BZE4 634 aaKnown RBP23.43■■□□□ 1.34
USP4-208ENST00000464168 ADAMTS1Q9UHI8 967 aa23.43■■□□□ 1.34
USP4-208ENST00000464168 A0A1B0GTQ1 180 aa23.42■■□□□ 1.34
USP4-208ENST00000464168 A0A1W2PP55 124 aa23.42■■□□□ 1.34
USP4-208ENST00000464168 TARSL2A2RTX5 802 aaKnown RBP23.42■■□□□ 1.34
USP4-208ENST00000464168 TYW5A2RUC4 315 aaKnown RBP23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms