RNA–Protein interactions for RNA: ENST00000463370.5

VAPB-203, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 2,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-203ENST00000463370 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.17□□□□□ -0.3
VAPB-203ENST00000463370 PID1Q7Z2X4 250 aa13.17□□□□□ -0.3
VAPB-203ENST00000463370 NUP93Q8N1F7 819 aa13.17□□□□□ -0.3
VAPB-203ENST00000463370 SLC44A1Q8WWI5 657 aa13.17□□□□□ -0.3
VAPB-203ENST00000463370 CKAP2Q8WWK9 683 aa13.17□□□□□ -0.3
VAPB-203ENST00000463370 ZNF419Q96HQ0 510 aaPredicted RBP13.17□□□□□ -0.3
VAPB-203ENST00000463370 FUBP3Q96I24 572 aaKnown RBP eCLIP13.17□□□□□ -0.3
VAPB-203ENST00000463370 EBNA1BP2Q99848 306 aaKnown RBP13.17□□□□□ -0.3
VAPB-203ENST00000463370 FRMD8Q9BZ67 464 aaPredicted RBP13.17□□□□□ -0.3
VAPB-203ENST00000463370 OSBPL2Q9H1P3 480 aa13.17□□□□□ -0.3
VAPB-203ENST00000463370 SAGE1Q9NXZ1 904 aa13.17□□□□□ -0.3
VAPB-203ENST00000463370 OGDHLQ9ULD0 1010 aa13.17□□□□□ -0.3
VAPB-203ENST00000463370 PCDHB5Q9Y5E4 795 aa13.17□□□□□ -0.3
VAPB-203ENST00000463370 WDR27A2RRH5 827 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 ZBTB24O43167 697 aaPredicted RBP13.16□□□□□ -0.3
VAPB-203ENST00000463370 USP12O75317 370 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 CPP00450 1065 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 ATP2A2P16615 1042 aaKnown RBP13.16□□□□□ -0.3
VAPB-203ENST00000463370 FOXN2P32314 431 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 FDFT1P37268 417 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 GARSP41250 739 aaKnown RBP13.16□□□□□ -0.3
VAPB-203ENST00000463370 SESN2P58004 480 aaPredicted RBP13.16□□□□□ -0.3
VAPB-203ENST00000463370 NR1H3Q13133 447 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 SLC1A5Q15758 541 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 SMAD1Q15797 465 aaKnown RBP13.16□□□□□ -0.3
VAPB-203ENST00000463370 ZNF280DQ6N043 979 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 PRSS55Q6UWB4 352 aaPredicted RBP13.16□□□□□ -0.3
VAPB-203ENST00000463370 C14orf80Q86SX3 495 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 NPAS4Q8IUM7 802 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 ZSCAN18Q8TBC5 510 aaPredicted RBP13.16□□□□□ -0.3
VAPB-203ENST00000463370 DPF3Q92784 378 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 FCRL2Q96LA5 508 aaPredicted RBP13.16□□□□□ -0.3
VAPB-203ENST00000463370 C8orf48Q96LL4 319 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 AGAP3Q96P47 875 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 SMC6Q96SB8 1091 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 PAIP2Q9BPZ3 127 aaKnown RBP13.16□□□□□ -0.3
VAPB-203ENST00000463370 KLHL8Q9P2G9 620 aaPredicted RBP13.16□□□□□ -0.3
VAPB-203ENST00000463370 SCML2Q9UQR0 700 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 MTMR11A4FU01 709 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 PRPF4O43172 522 aaKnown RBP eCLIP13.16□□□□□ -0.3
VAPB-203ENST00000463370 ADAM12O43184 909 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 UPP2O95045 317 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 ASMTLO95671 621 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 CPB1P15086 417 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 CCR1P32246 355 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 PARP6Q2NL67 630 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 MANEALQ5VSG8 457 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.16□□□□□ -0.3
VAPB-203ENST00000463370 PPM1NQ8N819 430 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 SPOCK2Q92563 424 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 VWCEQ96DN2 955 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 SERAC1Q96JX3 654 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 PPCSQ9HAB8 311 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 FGFR1OP2Q9NVK5 253 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 NKIRAS1Q9NYS0 192 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 SLC17A6Q9P2U8 582 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 VWA8A3KMH1 1905 aa13.16□□□□□ -0.3
VAPB-203ENST00000463370 BPTFQ12830 3046 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 KCNU1A8MYU2 1149 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 TBC1D4O60343 1298 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 STK10O94804 968 aaKnown RBP13.15□□□□□ -0.3
VAPB-203ENST00000463370 APOEP02649 317 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 CSH1P0DML2 217 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 CSH2P0DML3 217 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 MGAT1P26572 445 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 STX2P32856 288 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 IFT88Q13099 833 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 ZKSCAN8Q15776 578 aaPredicted RBP13.15□□□□□ -0.3
VAPB-203ENST00000463370 TRIM60Q495X7 471 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 C6orf89Q6UWU4 347 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 MON1AQ86VX9 555 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 ARHGAP12Q8IWW6 846 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 CTAGE3PQ8IX95 158 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 ARNTL2Q8WYA1 636 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 HDAC11Q96DB2 347 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 HAPLN3Q96S86 360 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 SEPT5Q99719 369 aaPredicted RBP13.15□□□□□ -0.3
VAPB-203ENST00000463370 TRIM62Q9BVG3 475 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 XAB2Q9HCS7 855 aaKnown RBP13.15□□□□□ -0.3
VAPB-203ENST00000463370 MPP6Q9NZW5 540 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 IGSF9Q9P2J2 1179 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 HS3ST4Q9Y661 456 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 PATJQ8NI35 1801 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 DFFAO00273 331 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 TRIM66O15016 1216 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 SPAG6O75602 509 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 CA4P22748 312 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 PRKCHP24723 683 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 TLE2Q04725 743 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 BRMS1LQ5PSV4 323 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 LRRC8BQ6P9F7 803 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 PDZD4Q76G19 769 aaPredicted RBP13.15□□□□□ -0.3
VAPB-203ENST00000463370 TMCO2Q7Z6W1 182 aaPredicted RBP13.15□□□□□ -0.3
VAPB-203ENST00000463370 APBB2Q92870 758 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 LRRC39Q96DD0 335 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 TGS1Q96RS0 853 aaKnown RBP13.15□□□□□ -0.3
VAPB-203ENST00000463370 ELAC2Q9BQ52 826 aaKnown RBP13.15□□□□□ -0.3
VAPB-203ENST00000463370 MLPHQ9BV36 600 aaPredicted RBP13.15□□□□□ -0.3
VAPB-203ENST00000463370 IL1RAPL1Q9NZN1 696 aa13.15□□□□□ -0.3
VAPB-203ENST00000463370 CXCL10P02778 98 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms