RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 LACTBL1A8MY62 500 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 F8W8V4 182 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 HSPA4LO95757 839 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 STAU1O95793 577 aaKnown RBP12.77□□□□□ -0.37
HDAC4-208ENST00000463007 UQCRBP14927 111 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 MGAT1P26572 445 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 CRABP2P29373 138 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 CPOXP36551 454 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 PTPN11Q06124 597 aaPredicted RBP12.77□□□□□ -0.37
HDAC4-208ENST00000463007 INCA1Q0VD86 236 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 TTLL4Q14679 1199 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 FAM219BQ5XKK7 198 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 FAM183BPQ6ZVS7 135 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 ARPINQ7Z6K5 226 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 PDSS2Q86YH6 399 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 TRIM42Q8IWZ5 723 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 PYROXD2Q8N2H3 581 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 NME8Q8N427 588 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 PQLC3Q8N755 202 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 PPTC7Q8NI37 304 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 NAT14Q8WUY8 206 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 RNF157Q96PX1 679 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 LIN28AQ9H9Z2 209 aaKnown RBP12.77□□□□□ -0.37
HDAC4-208ENST00000463007 TMPRSS4Q9NRS4 437 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 GALNT8Q9NY28 637 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 DTNAQ9Y4J8 743 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 HCRTO43612 131 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 INSRRP14616 1297 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 GPD1P21695 349 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 SOX11P35716 441 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 PDE1CQ14123 709 aaPredicted RBP12.76□□□□□ -0.37
HDAC4-208ENST00000463007 SLC10A6Q3KNW5 377 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 MARCH8Q5T0T0 291 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 C6orf52Q5T4I8 152 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 JADE1Q6IE81 842 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 KCNT2Q6UVM3 1135 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 NDRG1Q92597 394 aaKnown RBP12.76□□□□□ -0.37
HDAC4-208ENST00000463007 MCRS1Q96EZ8 462 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 SIRPGQ9P1W8 387 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 NUP205Q92621 2012 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 STAG3L1P0CL83 205 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 CYP3A5P20815 502 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 EPHA3P29320 983 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 IDH3AP50213 366 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 DYNC1I2Q13409 638 aaKnown RBP12.76□□□□□ -0.37
HDAC4-208ENST00000463007 TFDP2Q14188 446 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 TEDDM1Q5T9Z0 273 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 TMEM198Q66K66 360 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 USP50Q70EL3 339 aaPredicted RBP12.76□□□□□ -0.37
HDAC4-208ENST00000463007 ILDR2Q71H61 639 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 MAVSQ7Z434 540 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 SPATA6LQ8N4H0 392 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 CMASQ8NFW8 434 aaPredicted RBP12.76□□□□□ -0.37
HDAC4-208ENST00000463007 CLEC4CQ8WTT0 213 aa12.76□□□□□ -0.37
HDAC4-208ENST00000463007 ASB14A6NK59 587 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 XPO1O14980 1071 aaKnown RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 CSPG5O95196 566 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 CLPTM1O96005 669 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ALDOAP04075 364 aaKnown RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 TLR1Q15399 786 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 GSTA3Q16772 222 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 TBC1D25Q3MII6 688 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 CMPK2Q5EBM0 449 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 GJC2Q5T442 439 aaPredicted RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 MAP1SQ66K74 1059 aaPredicted RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ZNF781Q8N8C0 355 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 GSDMBQ8TAX9 411 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 FAM81AQ8TBF8 368 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 TFB1MQ8WVM0 346 aaKnown RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ATP2A3Q93084 1043 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 TMA16Q96EY4 203 aaKnown RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 CPB2Q96IY4 423 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 LENG8Q96PV6 779 aaPredicted RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 CDRT15Q96T59 188 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 SNRNP25Q9BV90 132 aaKnown RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 FAM192AQ9GZU8 254 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 FAM124BQ9H5Z6 455 aaPredicted RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ASB7Q9H672 318 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 HES2Q9Y543 173 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ZBTB14O43829 449 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ENDOD1O94919 500 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 RALBP11234 206 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ATICP31939 592 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 GPD2P43304 727 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 SLC10A2Q12908 348 aaPredicted RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 PDCD2Q16342 344 aaPredicted RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 SLC9B1Q4ZJI4 515 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ZNF467Q7Z7K2 595 aaPredicted RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ACOT1Q86TX2 421 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 MAP7D3Q8IWC1 876 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ZFAND2BQ8WV99 257 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ANLNQ9NQW6 1124 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 RNF181Q9P0P0 153 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ANKRD33BA6NCL7 494 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 MED7O43513 233 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 YBX3P16989 372 aaKnown RBP eCLIP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ARF4P18085 180 aaPredicted RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ITGAXP20702 1163 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 AVPR1AP37288 418 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ALDH1A3P47895 512 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms