RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 BPIFB4P59827 614 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 MIIPQ5JXC2 388 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 TTC39BQ5VTQ0 682 aaPredicted RBP14.44□□□□□ -0.1
USP4-206ENST00000461553 DCAF12L1Q5VU92 463 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 OR6B2Q6IFH4 312 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 C11orf57Q6ZUT1 292 aaPredicted RBP14.44□□□□□ -0.1
USP4-206ENST00000461553 FAM183BPQ6ZVS7 135 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 FAM124AQ86V42 546 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 SLC47A2Q86VL8 602 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 DEFB106AQ8N104 65 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 MINDY1Q8N5J2 469 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 CADM4Q8NFZ8 388 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 RNF34Q969K3 372 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 MYEOVQ96EZ4 313 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 SLC2A13Q96QE2 648 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 NUP58Q9BVL2 599 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 PDCL3Q9H2J4 239 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 SLC32A1Q9H598 525 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 DDIT4Q9NX09 232 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 COX16Q9P0S2 106 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 XPO7Q9UIA9 1087 aaKnown RBP14.44□□□□□ -0.1
USP4-206ENST00000461553 NFE2L3Q9Y4A8 694 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 KNL1Q8NG31 2342 aa14.44□□□□□ -0.1
USP4-206ENST00000461553 ARHGAP33O14559 1287 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 GRAP2O75791 330 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 ERBB2P04626 1255 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 CEACAM1P13688 526 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 EEF1GP26641 437 aaKnown RBP14.43□□□□□ -0.1
USP4-206ENST00000461553 CCR1P32246 355 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 PITX1P78337 314 aaPredicted RBP14.43□□□□□ -0.1
USP4-206ENST00000461553 ZBTB16Q05516 673 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 MTA1Q13330 715 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 TAF5Q15542 800 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 PTPN20Q4JDL3 420 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 CT47A1Q5JQC4 288 aaPredicted RBP14.43□□□□□ -0.1
USP4-206ENST00000461553 PITRM1Q5JRX3 1037 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 RABGAP1LQ5R372 815 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 RNF219Q5W0B1 726 aaPredicted RBP14.43□□□□□ -0.1
USP4-206ENST00000461553 ZNF776Q68DI1 518 aaPredicted RBP14.43□□□□□ -0.1
USP4-206ENST00000461553 OLFML1Q6UWY5 402 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 CFAP52Q8N1V2 620 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 ZCCHC9Q8N567 271 aaKnown RBP14.43□□□□□ -0.1
USP4-206ENST00000461553 DEFB124Q8NES8 71 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 SNX19Q92543 992 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 TTC17Q96AE7 1141 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 GBP4Q96PP9 640 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 MIR1-1HGQ9H1L0 117 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 PCED1AQ9H1Q7 454 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 PRSS16Q9NQE7 514 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.43□□□□□ -0.1
USP4-206ENST00000461553 KIAA1522Q9P206 1035 aaPredicted RBP14.43□□□□□ -0.1
USP4-206ENST00000461553 SUN2Q9UH99 717 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 FHOD1Q9Y613 1164 aa14.43□□□□□ -0.1
USP4-206ENST00000461553 CABIN1Q9Y6J0 2220 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 A0A1B0GTW7 788 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 A0A1B0GVM2 712 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 TCAF2A6NFQ2 919 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 KCNU1A8MYU2 1149 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 FOXN3O00409 490 aaPredicted RBP14.42□□□□□ -0.1
USP4-206ENST00000461553 GIPC1O14908 333 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 TPM2P07951 284 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 MAOBP27338 520 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 CLCN1P35523 988 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 DRAP1Q14919 205 aaPredicted RBP14.42□□□□□ -0.1
USP4-206ENST00000461553 TCP11X2Q5H9J9 407 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 CLEC17AQ6ZS10 378 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 SLC26A9Q7LBE3 791 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 ZDHHC17Q8IUH5 632 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 FAM71AQ8IYT1 594 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 WDTC1Q8N5D0 677 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 TMEM35BQ8NCS4 154 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 DNASE2BQ8WZ79 361 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 LMLNQ96KR4 655 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 PLCB1Q9NQ66 1216 aa14.42□□□□□ -0.1
USP4-206ENST00000461553 SAMSN1Q9NSI8 373 aaKnown RBP14.42□□□□□ -0.1
USP4-206ENST00000461553 METTL12A8MUP2 240 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 RNASEH1O60930 286 aaKnown RBP14.41□□□□□ -0.1
USP4-206ENST00000461553 SRPRAP08240 638 aaKnown RBP14.41□□□□□ -0.1
USP4-206ENST00000461553 RPS14P62263 151 aaKnown RBP14.41□□□□□ -0.1
USP4-206ENST00000461553 SHC2P98077 582 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 SLC6A3Q01959 620 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 GRIK2Q13002 908 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 NME3Q13232 169 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 HNRNPA1L2Q32P51 320 aaKnown RBP14.41□□□□□ -0.1
USP4-206ENST00000461553 FSCBQ5H9T9 825 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 MMS22LQ6ZRQ5 1243 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 CIR1Q86X95 450 aaPredicted RBP14.41□□□□□ -0.1
USP4-206ENST00000461553 KDM1BQ8NB78 822 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 MSANTD4Q8NCY6 345 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 MYO19Q96H55 970 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 RPRD1AQ96P16 312 aaPredicted RBP14.41□□□□□ -0.1
USP4-206ENST00000461553 ZDHHC5Q9C0B5 715 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 BTBD1Q9H0C5 482 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 LMBRD1Q9NUN5 540 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 TAB2Q9NYJ8 693 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 RRN3Q9NYV6 651 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 INTS6Q9UL03 887 aaKnown RBP14.41□□□□□ -0.1
USP4-206ENST00000461553 STAP1Q9ULZ2 295 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 SCML1Q9UN30 329 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 ERVW-1Q9UQF0 538 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms