RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TXNRD1Q16881 649 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 ITFG1Q8TB96 612 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 BTN2A2Q8WVV5 523 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 RIN2Q8WYP3 895 aaPredicted RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 MKL1Q969V6 931 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 RNF25Q96BH1 459 aaPredicted RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 PANX3Q96QZ0 392 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 FAM47E-STBD1D6RA91 191 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 SGTAO43765 313 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 ALOX15P16050 662 aaPredicted RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 PAX7P23759 505 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 SEC24CP53992 1094 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 GSPT2Q8IYD1 628 aaKnown RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 NATD1Q8N6N6 113 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 C14orf105Q9NVL8 296 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 HEG1Q9ULI3 1381 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 E9PBE3 544 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 NOL4O94818 638 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 TCEA2Q15560 299 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 PSMD5Q16401 504 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 SNRNP35Q16560 246 aaKnown RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 SLC7A14Q8TBB6 771 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 NR4A3Q92570 626 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 SENP6Q9GZR1 1112 aaPredicted RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 PADI4Q9UM07 663 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 DUSP12Q9UNI6 340 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 PCDHA3Q9Y5H8 950 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 FAM237AA0A1B0GTK4 181 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 DENND3A2RUS2 1198 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 PI4K2BG5E9Z4 385 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 VNN2O95498 520 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 FYNP06241 537 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 NFYCQ13952 458 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 BTBD8Q5XKL5 378 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 PACS2Q86VP3 889 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 ERI1Q8IV48 349 aaKnown RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 HEXDCQ8WVB3 486 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 C1orf54Q8WWF1 131 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 FAXDC2Q96IV6 333 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 LXNQ9BS40 222 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 MND1Q9BWT6 205 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 CDH19Q9H159 772 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 MTF2Q9Y483 593 aaPredicted RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 ARPC4-TTLL3A0A0A6YYG9 625 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 CCDC195A0A1B0GUA6 201 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 G3V2T6 193 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 PSMB9P28065 219 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 IL18R1Q13478 541 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 LYPLAL1Q5VWZ2 237 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 MAEAQ7L5Y9 396 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 CACTIN-AS1Q8N1I8 211 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 CNTD1Q8N815 330 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 NDFIP2Q9NV92 336 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 CRYL1Q9Y2S2 319 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 MYH7BA7E2Y1 1941 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 GLI2P10070 1586 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 KCNK1O00180 336 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 EEF2KO00418 725 aaKnown RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 PRKCIP41743 596 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 DCAF4L1Q3SXM0 396 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 CCDC81Q6ZN84 652 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ROPN1LQ96C74 230 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 PRDM4Q9UKN5 801 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 GINS2Q9Y248 185 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 HPSEQ9Y251 543 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 THRAP3Q9Y2W1 955 aaKnown RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 MGAT4DA6NG13 374 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ASB14A6NK59 587 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 TRIM38O00635 465 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ALDH1A2O94788 518 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 PHKG2P15735 406 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 HNRNPH3P31942 346 aaKnown RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 GUCY1A2P33402 732 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 NSUN2Q08J23 767 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS53-204ENST00000437048 TRAF2Q12933 501 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 CAMK1Q14012 370 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ZNF57Q68EA5 555 aaPredicted RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 PTRHD1Q6GMV3 140 aaKnown RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 KATNAL2Q8IYT4 538 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 OR6B3Q8NGW1 331 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 DNAJB3Q8WWF6 145 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 FAM49BQ9NUQ9 324 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 RGS14O43566 566 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 BMT2Q1RMZ1 405 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 MTERF2Q49AM1 385 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 AKAP1Q92667 903 aaKnown RBP eCLIP7.32□□□□□ -1.245e-12■■■■■ 33.4
VPS53-204ENST00000437048 FAM111AQ96PZ2 611 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 HSPBP1Q9NZL4 362 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ASXL3Q9C0F0 2248 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 SPEF2Q9C093 1822 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 RIPK2O43353 540 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 PEX3P56589 373 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 PLEKHG6Q3KR16 790 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 PAGE2BQ5JRK9 111 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 C4orf33Q8N1A6 199 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 C7orf31Q8N865 590 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 GOLM1Q8NBJ4 401 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ZFP28Q8NHY6 868 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 CCDC107Q8WV48 283 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 PCDH18Q9HCL0 1135 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms