RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 IGKV2D-30A0A075B6S6 120 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 A0A0G2JK05 382 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 M0QYT0 321 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 ALPLP05186 524 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 IFIT2P09913 472 aaKnown RBP3.79□□□□□ -1.8
CLK1-204ENST00000432425 CDC25AP30304 524 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 HTR6P50406 440 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 PPATQ06203 517 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 PTGR1Q14914 329 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 ZNF569Q5MCW4 686 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 EME1Q96AY2 570 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 TMEM41AQ96HV5 264 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 CLMNQ96JQ2 1002 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 ZNF347Q96SE7 839 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 ELAC2Q9BQ52 826 aaKnown RBP3.79□□□□□ -1.8
CLK1-204ENST00000432425 WDR83Q9BRX9 315 aaKnown RBP3.79□□□□□ -1.8
CLK1-204ENST00000432425 FZD3Q9NPG1 666 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.79□□□□□ -1.8
CLK1-204ENST00000432425 SLC12A4Q9UP95 1085 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 LAMP3Q9UQV4 416 aa3.79□□□□□ -1.8
CLK1-204ENST00000432425 TRIP12Q14669 1992 aaPredicted RBP3.79□□□□□ -1.8
CLK1-204ENST00000432425 LMTK3Q96Q04 1460 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TBC1D3DA0A087WVF3 549 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TBC1D3IA0A087WXS9 549 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TBC1D3EA0A087X179 549 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TBC1D3KA0A087X1G2 549 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TBC1D3BA6NDS4 549 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TBC1D3FA6NER0 549 aaPredicted RBP3.78□□□□□ -1.8
CLK1-204ENST00000432425 FAM90A8PA6NJQ4 464 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 KIF28PB7ZC32 967 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TBC1D3LB9A6J9 549 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 DNPH1O43598 174 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 ASNA1O43681 348 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 ALDOCP09972 364 aaKnown RBP3.78□□□□□ -1.8
CLK1-204ENST00000432425 FAM90A13PP0C7W8 464 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 FAM90A24PP0C7X0 464 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TBC1D3HP0C7X1 549 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 PPM1AP35813 382 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 RPL15P61313 204 aaKnown RBP3.78□□□□□ -1.8
CLK1-204ENST00000432425 SHC2P98077 582 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 RNASELQ05823 741 aaKnown RBP3.78□□□□□ -1.8
CLK1-204ENST00000432425 PIK3CD-AS1Q5SR53 167 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TBC1D3GQ6DHY5 549 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TBC1D3CQ6IPX1 549 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 ADGRF3Q8IZF5 1079 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TBC1D3Q8IZP1 549 aaPredicted RBP3.78□□□□□ -1.8
CLK1-204ENST00000432425 PAQR4Q8N4S7 273 aaPredicted RBP3.78□□□□□ -1.8
CLK1-204ENST00000432425 LPAR1Q92633 364 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 MARK4Q96L34 752 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TMEM120AQ9BXJ8 343 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TP63Q9H3D4 680 aaPredicted RBP3.78□□□□□ -1.8
CLK1-204ENST00000432425 CDC23Q9UJX2 597 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 TRPC5Q9UL62 973 aaPredicted RBP3.78□□□□□ -1.8
CLK1-204ENST00000432425 TNFSF13BQ9Y275 285 aa3.78□□□□□ -1.8
CLK1-204ENST00000432425 AQP12BA6NM10 295 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 WNT1P04628 370 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 FGF2P09038 288 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 CHRNB1P11230 501 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 CCKARP32238 428 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 THBS3P49746 956 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 SF3A3Q12874 501 aaKnown RBP eCLIP3.78□□□□□ -1.817e-7■■■□□ 14.6
CLK1-204ENST00000432425 KIAA1755Q5JYT7 1200 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 TTC39AQ5SRH9 613 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 C10orf76Q5T2E6 689 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 MSI2Q96DH6 328 aaKnown RBP3.78□□□□□ -1.81
CLK1-204ENST00000432425 LYZL4Q96KX0 146 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 OSBPL5Q9H0X9 879 aaPredicted RBP3.78□□□□□ -1.81
CLK1-204ENST00000432425 TASP1Q9H6P5 420 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 MRPL44Q9H9J2 332 aaKnown RBP3.78□□□□□ -1.81
CLK1-204ENST00000432425 MLXIPQ9HAP2 919 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 ZBTB1Q9Y2K1 713 aa3.78□□□□□ -1.81
CLK1-204ENST00000432425 GOLGA6L3A6NEY3 463 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 A6NNC1 897 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 FFAR2O15552 330 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 ATG13O75143 517 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 LARGE1O95461 756 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 CYP3A4P08684 503 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 PEPDP12955 493 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 IGFBP2P18065 325 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 KCNJ4P48050 445 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 POLD2P49005 469 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 RBM6P78332 1123 aaKnown RBP3.77□□□□□ -1.81
CLK1-204ENST00000432425 GALNT3Q14435 633 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 SEMA3AQ14563 771 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 XRRA1Q6P2D8 792 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 HMGB4Q8WW32 186 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 THOC3Q96J01 351 aaKnown RBP3.77□□□□□ -1.81
CLK1-204ENST00000432425 ADAD1Q96M93 576 aaKnown RBP3.77□□□□□ -1.81
CLK1-204ENST00000432425 LRCH1Q9Y2L9 728 aa3.77□□□□□ -1.81
CLK1-204ENST00000432425 FOXO6A8MYZ6 492 aa3.76□□□□□ -1.81
CLK1-204ENST00000432425 MSI1O43347 362 aaKnown RBP3.76□□□□□ -1.81
CLK1-204ENST00000432425 T-ENOLP0DO92 83 aa3.76□□□□□ -1.81
CLK1-204ENST00000432425 CDKN2AP42771 156 aaKnown RBP3.76□□□□□ -1.81
CLK1-204ENST00000432425 P2RX3P56373 397 aa3.76□□□□□ -1.81
CLK1-204ENST00000432425 SPARCL1Q14515 664 aa3.76□□□□□ -1.81
CLK1-204ENST00000432425 BTBD16Q32M84 506 aa3.76□□□□□ -1.81
CLK1-204ENST00000432425 ATPAF1Q5TC12 328 aaPredicted RBP3.76□□□□□ -1.81
CLK1-204ENST00000432425 NUGGCQ68CJ6 796 aa3.76□□□□□ -1.81
CLK1-204ENST00000432425 TTLL5Q6EMB2 1281 aa3.76□□□□□ -1.81
CLK1-204ENST00000432425 HMBOX1Q6NT76 420 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms