RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 GUCY1B2O75343 617 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 ERN1O75460 977 aaKnown RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 RTN3O95197 1032 aaPredicted RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 SCGB1D1O95968 90 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 HNRNPA1P09651 372 aaKnown RBP eCLIP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 ATP1A3P13637 1013 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 FGFR4P22455 802 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 TGM1P22735 817 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 PSMA4P25789 261 aaKnown RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 ARL1P40616 181 aaPredicted RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 NPTX2P47972 431 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 KCNC1P48547 511 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 FKBP1BP68106 108 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 OCA2Q04671 838 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 TEFQ10587 303 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 TUBB3Q13509 450 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 KCNA10Q16322 511 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 PTCHD3Q3KNS1 767 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 GALNTL6Q49A17 601 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 TBC1D10BQ4KMP7 808 aaPredicted RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 WDR45BQ5MNZ6 344 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 C1QL3Q5VWW1 255 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 SP5Q6BEB4 398 aaPredicted RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 MSANTD2Q6P1R3 559 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 SPOCD1Q6ZMY3 1216 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 RRAGAQ7L523 313 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 GSPT2Q8IYD1 628 aaKnown RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 ADGRG5Q8IZF4 528 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 ABRAQ8N0Z2 381 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 TDRD7Q8NHU6 1098 aaKnown RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 CSGALNACT1Q8TDX6 532 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 OSCP1Q8WVF1 389 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 HMGB4Q8WW32 186 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 TMEM176AQ96HP8 235 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 RBM17Q96I25 401 aaKnown RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 BOD1Q96IK1 185 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 PHACTR3Q96KR7 559 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 OR14A2Q96R54 314 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 NEU1Q99519 415 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 SLC38A3Q99624 504 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 CHCHD6Q9BRQ6 235 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 PDCL3Q9H2J4 239 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 SMOC2Q9H3U7 446 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 PRDM13Q9H4Q3 707 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 CHODLQ9H9P2 273 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 TMEM74BQ9NUR3 256 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 VSX1Q9NZR4 365 aaPredicted RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 AASSQ9UDR5 926 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 RIMKLBQ9ULI2 386 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 ARHGAP26Q9UNA1 814 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.5□□□□□ -1.69
HMGB3-203ENST00000430118 CHST2Q9Y4C5 530 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 CYP46A1Q9Y6A2 500 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 NPC1L1Q9UHC9 1359 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 UBR2Q8IWV8 1755 aa4.5□□□□□ -1.69
HMGB3-203ENST00000430118 RIC1Q4ADV7 1423 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 A6NCN8 305 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 SLC38A8A6NNN8 435 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 ADM5C9JUS6 153 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 CTIFO43310 598 aaKnown RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 RECQL4O94761 1208 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 WDR47O94967 919 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 CAMTA2O94983 1202 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 CFIP05156 583 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 CSF1P09603 554 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 MYCLP12524 364 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 HGFP14210 728 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 MSX2P35548 267 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 ANP32AP39687 249 aaKnown RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 TNNT2P45379 298 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 GMPSP49915 693 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 RBM5P52756 815 aaKnown RBP eCLIP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 TBL3Q12788 808 aaKnown RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 FOXL1Q12952 345 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 FHL3Q13643 280 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 DCTN1Q14203 1278 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 ARHGEF6Q15052 776 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 GPR68Q15743 365 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 PREPLQ4J6C6 727 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 ZNF569Q5MCW4 686 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 GPATCH4Q5T3I0 446 aaKnown RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 TEDDM1Q5T9Z0 273 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 CCDC30Q5VVM6 783 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 ITPRIPL1Q6GPH6 555 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 INO80CQ6PI98 192 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 C16orf54Q6UWD8 224 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 MAPKAPK5Q8IW41 473 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 RPAP2Q8IXW5 612 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 IZUMO1Q8IYV9 350 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 FSTL5Q8N475 847 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 ZNF808Q8N4W9 903 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 MB21D1Q8N884 522 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 PTGR2Q8N8N7 351 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 FSIP1Q8NA03 581 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 TBC1D22AQ8WUA7 517 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 UCMAQ8WVF2 138 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 ATRIPQ8WXE1 791 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 ZUFSPQ96AP4 578 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 FAM136AQ96C01 138 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 RSRC1Q96IZ7 334 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms