RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RPA3P35244 121 aaPredicted RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 UGT1A5P35504 534 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ACTR3P61158 418 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 RIPPLY1Q0D2K3 151 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 BOP1Q14137 746 aaKnown RBP7□□□□□ -1.29
SCN1A-204ENST00000423058 KCNT1Q5JUK3 1230 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 BRSK2Q8IWQ3 736 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 SPPL2AQ8TCT8 520 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ACTRT2Q8TDY3 377 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 UROC1Q96N76 676 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 CDADC1Q9BWV3 514 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 MTFR1LQ9H019 292 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 XPNPEP3Q9NQH7 507 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 FAM153AQ9UHL3 310 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF780BQ9Y6R6 833 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 UMODL1Q5DID0 1318 aa7□□□□□ -1.29
SCN1A-204ENST00000423058 H3BUI4 141 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 CES2O00748 559 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ADH1CP00326 375 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TSPAN19P0C672 248 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 COMTP21964 271 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 SMIM11AP58511 58 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PTSQ03393 145 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 MTAPQ13126 283 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 THOC7Q6I9Y2 204 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 C4orf33Q8N1A6 199 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TMEM176AQ96HP8 235 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 MS4A14Q96JA4 679 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 SLC4A9Q96Q91 983 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FANCFQ9NPI8 374 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 DDX43Q9NXZ2 648 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF624Q9P2J8 865 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TRHDEQ9UKU6 1024 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TRIM17Q9Y577 477 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 VIRMAQ69YN4 1812 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 VSTM5A8MXK1 200 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 XPO1O14980 1071 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ADCY6O43306 1168 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 MAGEC1O60732 1142 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 RBMXL2O75526 392 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 SRGNP10124 158 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 GSTM5P46439 218 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 INAVAQ3KP66 663 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FGD3Q5JSP0 725 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 SPANXN3Q5MJ09 141 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 MFSD7Q6UXD7 560 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 KIAA1324Q6UXG2 1013 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FMR1NBQ8N0W7 255 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 CERKQ8TCT0 537 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 NEK7Q8TDX7 302 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 Q96MT0 163 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 SLC38A2Q96QD8 506 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 SENP6Q9GZR1 1112 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ALDH8A1Q9H2A2 487 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ZNHIT2Q9UHR6 403 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ZBTB12Q9Y330 459 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TNPO3Q9Y5L0 923 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TULP4Q9NRJ4 1543 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FER1L4A9Z1Z3 1794 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 A0A087X1B8 175 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 MED26O95402 600 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PRG2P13727 222 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 H2AFXP16104 143 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 EPS8Q12929 822 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TEAD4Q15561 434 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 BNC2Q6ZN30 1099 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ILDR2Q71H61 639 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 MB21D2Q8IYB1 491 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FICDQ9BVA6 458 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PRDM8Q9NQV8 689 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ELOVL2Q9NXB9 296 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 OR10H1Q9Y4A9 318 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ROBO2Q9HCK4 1378 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TFE3P19532 575 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 CCNA2P20248 432 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 NDUFV1P49821 464 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 SRSF11Q05519 484 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 RBBP4Q09028 425 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TOB2Q14106 344 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PCBP1Q15365 356 aaKnown RBP eCLIP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 SMU1Q2TAY7 513 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 RBM43Q6ZSC3 357 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 EXOC3L1Q86VI1 746 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FNDC5Q8NAU1 212 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FAM126AQ9BYI3 521 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 RNF208Q9H0X6 261 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 A1CFQ9NQ94 594 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TPRKBQ9Y3C4 175 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 GPSM3Q9Y4H4 160 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 CHP2O43745 196 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FAM20BO75063 409 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TMEM253P0C7T8 217 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 DGKAP23743 735 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 MEA1Q16626 185 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 DOK6Q6PKX4 331 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FBXO39Q8N4B4 442 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 CCDC54Q8NEL0 328 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FAM172AQ8WUF8 416 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 CENPIQ92674 756 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ERP44Q9BS26 406 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms