RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 INTS7Q9NVH2 962 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 ST3GAL5Q9UNP4 418 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 LMTK3Q96Q04 1460 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 C2orf71A6NGG8 1288 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 NFKB1P19838 968 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 FGFR2P21802 821 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 MKRN4PQ13434 485 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 GOLGA7BQ2TAP0 167 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 EPC2Q52LR7 807 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 TDRD10Q5VZ19 366 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 DNAJA4Q8WW22 397 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF354BQ96LW1 612 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 GORASP1Q9BQQ3 440 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF208O43345 1280 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 ACADMP11310 421 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 ITGALP20701 1170 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 SDC2P34741 201 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 NAB2Q15742 525 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 MFSD7Q6UXD7 560 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 TMPRSS6Q8IU80 811 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 GPALPP1Q8IXQ4 340 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 EPS8L3Q8TE67 593 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 EXO5Q9H790 373 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 NECTIN3Q9NQS3 549 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 CROTQ9UKG9 612 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 C15orf41Q9Y2V0 281 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 RSL1D1O76021 490 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 ATP4AP20648 1035 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 SLC11A2P49281 568 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 FMO5P49326 533 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 SPATA5L1Q9BVQ7 753 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 CRYL1Q9Y2S2 319 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 FCER1AP12319 257 aa13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 PPP2R2BQ00005 443 aa13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 NRF1Q16656 503 aa13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 SLC9A4Q6AI14 798 aa13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 OAFQ86UD1 273 aa13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF589Q86UQ0 364 aaPredicted RBP13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 ATP6V0D2Q8N8Y2 350 aa13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 EAF2Q96CJ1 260 aaPredicted RBP13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 PECAM1P16284 738 aaPredicted RBP13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNHIT3Q15649 155 aaPredicted RBP13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 ARPINQ7Z6K5 226 aa13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 RSPH9Q9H1X1 276 aaPredicted RBP13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 CDH7Q9ULB5 785 aa13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 CARD8Q9Y2G2 431 aa13.58□□□□□ -0.23
CCDC88A-204ENST00000413716 KIF28PB7ZC32 967 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 FOXN3O00409 490 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 MNDAP41218 407 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 TMEM132BQ14DG7 1078 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 RASGEF1AQ8N9B8 481 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 MARCH10Q8NA82 808 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 PTCD2Q8WV60 388 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 NEDD4P46934 1319 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 PCCAP05165 728 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 PDGFRBP09619 1106 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 PKN1Q16512 942 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 AADATQ8N5Z0 425 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 TMEM216Q9P0N5 145 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 ABCG2Q9UNQ0 655 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 ITGA2P17301 1181 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 ERCC2P18074 760 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 ADSSP30520 456 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 RAP1GAPP47736 663 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 USPL1Q5W0Q7 1092 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 ATCAYQ86WG3 371 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 ADSSL1Q8N142 457 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 USP38Q8NB14 1042 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 S100PBPQ96BU1 408 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 MTIF3Q9H2K0 278 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 CHL1O00533 1208 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 SNIP1Q8TAD8 396 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 SEMA6AQ9H2E6 1030 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 PRDM8Q9NQV8 689 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 AGRPO00253 132 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 NTSP30990 170 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 PRKAA2P54646 552 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 ILF3Q12906 894 aaKnown RBP eCLIP13.58□□□□□ -0.241e-7■■□□□ 13
CCDC88A-204ENST00000413716 FAM131AQ6UXB0 335 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 UTS2BQ765I0 119 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 TDRPQ86YL5 185 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 ZSWIM5Q9P217 1185 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 M0R036 132 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 BPNT1O95861 308 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 RABL6Q3YEC7 729 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 TEX47Q8TBZ9 253 aa13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 PABPC3Q9H361 631 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 SAMD4AQ9UPU9 718 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-204ENST00000413716 APBA3O96018 575 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 CASP1P29466 404 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 RPL4P36578 427 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 SMIM11AP58511 58 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 SNRNP35Q16560 246 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 INTS11Q5TA45 600 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 OR8H1Q8NGG4 311 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 TESCQ96BS2 214 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 WDCPQ9H6R7 721 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 SEC31BQ9NQW1 1179 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 THAP1Q9NVV9 213 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms