RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 CRTAC1Q9NQ79 661 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 MPP6Q9NZW5 540 aa13.75□□□□□ -0.21
VPS54-203ENST00000409558 C9IYK1 514 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 I6L893 689 aaPredicted RBP13.74□□□□□ -0.21
VPS54-203ENST00000409558 CFLARO15519 480 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 NFKB1P19838 968 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 CCND1P24385 295 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 PTPN4P29074 926 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 GJA9P57773 515 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 CRYMQ14894 314 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 ACAP1Q15027 740 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 EFHC1Q5JVL4 640 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 SWT1Q5T5J6 900 aaKnown RBP13.74□□□□□ -0.21
VPS54-203ENST00000409558 ZNF280DQ6N043 979 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 ZNF410Q86VK4 478 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 CCNYL1Q8N7R7 359 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 EXT2Q93063 718 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 B3GALT6Q96L58 329 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 APBA2Q99767 749 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 KCNK13Q9HB14 408 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 MCM8Q9UJA3 840 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 NRCAMQ92823 1304 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 PTGESO14684 152 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 CD4P01730 458 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 SV2CQ496J9 727 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 RPS27LQ71UM5 84 aaKnown RBP13.74□□□□□ -0.21
VPS54-203ENST00000409558 SMG8Q8ND04 991 aaKnown RBP13.74□□□□□ -0.21
VPS54-203ENST00000409558 ATP2A3Q93084 1043 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 ALKBH8Q96BT7 664 aaKnown RBP13.74□□□□□ -0.21
VPS54-203ENST00000409558 FERMT1Q9BQL6 677 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 MDM4O15151 490 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 STRNO43815 780 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 DLDP09622 509 aaKnown RBP13.74□□□□□ -0.21
VPS54-203ENST00000409558 PAX7P23759 505 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 CTBP1Q13363 440 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 PRKD1Q15139 912 aaPredicted RBP13.74□□□□□ -0.21
VPS54-203ENST00000409558 PKDCCQ504Y2 493 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 FCRL3Q96P31 734 aaPredicted RBP13.74□□□□□ -0.21
VPS54-203ENST00000409558 OSBPL1AQ9BXW6 950 aa13.74□□□□□ -0.21
VPS54-203ENST00000409558 XAB2Q9HCS7 855 aaKnown RBP13.74□□□□□ -0.21
VPS54-203ENST00000409558 TSR3Q9UJK0 312 aaKnown RBP13.74□□□□□ -0.21
VPS54-203ENST00000409558 BCLAF3A2AJT9 711 aaKnown RBP13.73□□□□□ -0.21
VPS54-203ENST00000409558 CD52P31358 61 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 ETV4P43268 484 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 PTDSS1P48651 473 aaKnown RBP13.73□□□□□ -0.21
VPS54-203ENST00000409558 NEK3P51956 506 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 PDE1CQ14123 709 aaPredicted RBP13.73□□□□□ -0.21
VPS54-203ENST00000409558 DPYSL2Q16555 572 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 ZNF276Q8N554 614 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 TEX9Q8N6V9 391 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 LINC01465Q8N7H1 131 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 KATNBL1Q9H079 304 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 OR12D3Q9UGF7 316 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 RRN3P2A6NIE6 340 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 CCDC22O60826 627 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 PEX11AO75192 247 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 SOAT2O75908 522 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 ALDOAP04075 364 aaKnown RBP13.73□□□□□ -0.21
VPS54-203ENST00000409558 SOX11P35716 441 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 MAXP61244 160 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 POU5F1BQ06416 359 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 TRIM32Q13049 653 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 FSCN1Q16658 493 aaKnown RBP13.73□□□□□ -0.21
VPS54-203ENST00000409558 SLC25A52Q3SY17 297 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 C1orf146Q5VVC0 180 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 PACS1Q6VY07 963 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 RBM15BQ8NDT2 890 aaKnown RBP13.73□□□□□ -0.21
VPS54-203ENST00000409558 PARK7Q99497 189 aaKnown RBP13.73□□□□□ -0.21
VPS54-203ENST00000409558 DUSP16Q9BY84 665 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 GOLGA8CPA6NN73 597 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 ENDOD1O94919 500 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 ITGA2BP08514 1039 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 CD1EP15812 388 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 PLK1P53350 603 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 TAZQ16635 292 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 RALGPS1Q5JS13 557 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 TCHHL1Q5QJ38 904 aaPredicted RBP13.73□□□□□ -0.21
VPS54-203ENST00000409558 ATG16L1Q676U5 607 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 PAQR9Q6ZVX9 377 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 DDX50Q9BQ39 737 aaKnown RBP13.73□□□□□ -0.21
VPS54-203ENST00000409558 LRMDAQ9H2I8 198 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 ABI2Q9NYB9 513 aaPredicted RBP13.73□□□□□ -0.21
VPS54-203ENST00000409558 FZD10Q9ULW2 581 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 ITGB1P05556 798 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 TSPAN8P19075 237 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 TCN1P20061 433 aaPredicted RBP13.73□□□□□ -0.21
VPS54-203ENST00000409558 ACSBG2Q5FVE4 666 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 NFKBIZQ9BYH8 718 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 CYP4F12Q9HCS2 524 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 VANGL2Q9ULK5 521 aa13.73□□□□□ -0.21
VPS54-203ENST00000409558 GSC2O15499 205 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 HSPA4LO95757 839 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 THP07101 528 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 ALADP13716 330 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 ETFBP38117 255 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 CHRNA4P43681 627 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 IQSEC1Q6DN90 963 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 LDB1Q86U70 411 aaPredicted RBP13.72□□□□□ -0.21
VPS54-203ENST00000409558 SMOQ99835 787 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 BTBD10Q9BSF8 475 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms